Try executing qualscore from the Windows command line: cd C:\Inetpub\tpp-bin java -jar qualscore.jar
Executing the above commands should give you a usage statement for Qualscore if everything is okay. After that, it's just a question of passing it the write parameters. Damian On Feb 28, 9:00 am, Jorey Dong <[email protected]> wrote: > Hi All, > > When I run QualScore embedded in TPP to assess the quality of tandem > mass spectra, the error occurs: > " > run_in c:/Inetpub/wwwroot/ISB/data; java -jar c:\Inetpub\tpp-bin > \qualscore.jar -c 1.0 -p 0.1 -a 20060502data06.xml > > java.lang.NoClassDefFoundError: org/jfree/data/SeriesDataset > Caused by: java.lang.ClassNotFoundException: > org.jfree.data.SeriesDataset > at java.net.URLClassLoader$1.run(Unknown Source) > at java.security.AccessController.doPrivileged(Native Method) > at java.net.URLClassLoader.findClass(Unknown Source) > at java.lang.ClassLoader.loadClass(Unknown Source) > at sun.misc.Launcher$AppClassLoader.loadClass(Unknown Source) > at java.lang.ClassLoader.loadClass(Unknown Source) > Could not find the main class: > org.systemsbiology.qualscore.commandline.Main. Program will exit. > Exception in thread "main" > command "java -jar c:\Inetpub\tpp-bin\qualscore.jar -c 1.0 -p 0.1 -a > 20060502data06.xml" failed: Operation not permitted > > Command FAILED > " > > Same error occurred when I run the data PeptideProphet output file > interact-20060502data06.xml. > > So any one can help me solve this problem? > > Best Regards. > > Elkan -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
