Hi Damian
Thanks for your kind help.
When I type the command "java -jar qualscore.jar" in the Windows
command line after moving to directory C:\Inetpub\tpp-bin, error still
occurs, as listed below:
"
Exception in thread "main" java.lang.NoClassDefFoundError: org/jfree/
data/SeriesDataset
Caused by: java.lang.ClassNotFoundException:
org.jfree.data.SeriesDataset
at java.net.URLClassLoader$1.run(Unknown Source)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(Unknown Source)
at java.lang.ClassLoader.loadClass(Unknown Source)
at sun.misc.Launcher$AppClassLoader.loadClass(Unknown Source)
at java.lang.ClassLoader.loadClass(Unknown Source)
Could not find the main class:
org.systemsbiology.qualscore.commandline.Main. Program will exit.
"
Does it mean that the Java Environment I installed is not appropriate?
Best Regards.
Elkan
On 2月29日, 上午12时33分, GATTACA <[email protected]> wrote:
> Try executing qualscore from the Windows command line:
> cd C:\Inetpub\tpp-bin
> java -jar qualscore.jar
>
> Executing the above commands should give you a usage statement for
> Qualscore if everything is okay.
> After that, it's just a question of passing it the write parameters.
>
> Damian
>
> On Feb 28, 9:00 am, Jorey Dong <[email protected]> wrote:
>
>
>
>
>
>
>
> > Hi All,
>
> > When I run QualScore embedded in TPP to assess the quality of tandem
> > mass spectra, the error occurs:
> > "
> > run_in c:/Inetpub/wwwroot/ISB/data; java -jar c:\Inetpub\tpp-bin
> > \qualscore.jar -c 1.0 -p 0.1 -a 20060502data06.xml
>
> > java.lang.NoClassDefFoundError: org/jfree/data/SeriesDataset
> > Caused by: java.lang.ClassNotFoundException:
> > org.jfree.data.SeriesDataset
> > at java.net.URLClassLoader$1.run(Unknown Source)
> > at java.security.AccessController.doPrivileged(Native Method)
> > at java.net.URLClassLoader.findClass(Unknown Source)
> > at java.lang.ClassLoader.loadClass(Unknown Source)
> > at sun.misc.Launcher$AppClassLoader.loadClass(Unknown Source)
> > at java.lang.ClassLoader.loadClass(Unknown Source)
> > Could not find the main class:
> > org.systemsbiology.qualscore.commandline.Main. Program will exit.
> > Exception in thread "main"
> > command "java -jar c:\Inetpub\tpp-bin\qualscore.jar -c 1.0 -p 0.1 -a
> > 20060502data06.xml" failed: Operation not permitted
>
> > Command FAILED
> > "
>
> > Same error occurred when I run the data PeptideProphet output file
> > interact-20060502data06.xml.
>
> > So any one can help me solve this problem?
>
> > Best Regards.
>
> > Elkan
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