Hello, I have installed TPP 4.5.2 on Ubuntu 10.10 using the instructions here <http://tools.proteomecenter.org/wiki/index.php? title=TPP_4.5.2:_Installing_on_Ubuntu_10.04.3>
In those instructions there are a couple of errors where chown is used when the command should be chmod. However, I believe I have the correct ownership and permissions on the directories and files for execution by apache2 but when I try to do any analysis via the web interface it fails. See below: As root I can successfully execute the below command from a shell but if I su to www-data which is the user apache2 runs as I get $ sh: Tandem2XML: not found Even if I execute it in the /usr/local/tpp/bin directory. Help please. Thanks in advance, Brian Hampton This is the command being submitted through the tpp_gui.pl: cd /usr/local/tpp/ISB/data; Tandem2XML /usr/local/tpp/ISB/data/ 120223_S1782-SDS_eHILLIC-frac-1.tandem /usr/local/tpp/ISB/data/ 120223_S1782-SDS_eHILLIC-frac-1.tandem Here is the result: # Commands for session T8PMKUQEN on Wed Feb 29 10:26:24 2012 # BEGIN COMMAND BLOCK ###### BEGIN Command Execution ###### [Wed Feb 29 10:26:24 2012] EXECUTING: cd /usr/local/tpp/ISB/data; Tandem2XML /usr/local/tpp/ISB/data/120223_S1782-SDS_eHILLIC- frac-1.tandem /usr/local/tpp/ISB/data/120223_S1782-SDS_eHILLIC- frac-1.tandem OUTPUT: sh: Tandem2XML: not found END OUTPUT RETURN CODE:32512 ###### End Command Execution ###### # All finished at Wed Feb 29 10:26:24 2012 # END COMMAND BLOCK -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
