Hello everybody, i am currently using SpectraST for building peptide librarys wich works fine. Now i am trying to validate my librarys by searching against them with known spectras and so i turned the -sM<tol> param up for testing purposes. I get the strange behaviour that if i have values of more than 500 the result pep.xml gets much less spectras. In fact it is empty. If i try 400 i get the right number of hits. Does anybody have clue why this happens?
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