Hello. I am sorry if I missed the solution to the original question about converting "*.msf to *.pepXML" and using it in TPP. Was there a workaround to using *.msf files in TPP? Thank you. Suzanne
On Wednesday, 8 August 2012 11:45:33 UTC-4, patrick Halvey wrote: > Hello. I came across this post while doing a google search for "conversion > of msf files to pepXML". I am trying to use Proteome Discoverer output with > a protein assembly tool called "IDpicker", but of course it is impossible > to export pepXML format from Proteome Discoverer. Has there been a > consensus reached on how to make the conversion to pepXML? Thanks > Patrick > > > On Tuesday, April 5, 2011 10:33:43 PM UTC-4, Christine Vogel wrote: > >> >> Hi All, >> >> Reposting Thomas' question from earlier -- what is a good converter >> from Thermo's .msf to TPP suitable files (i.e. pepXML)? >> >> I tried to find it on the list, and the discussion let me to here: >> >> https://github.com/itmat/thermo_msf/blob/master/README.rdoc#readme >> >> But I am unable to successfully install/use this. Any help on this >> converter/installation? >> >> Thanks a lot, >> >> Christine >> >> >> ----- >> >> From: Thomas DV <[email protected]> >> Date: Sun, 5 Dec 2010 08:43:28 -0800 (PST) >> Local: Sun, Dec 5 2010 12:43 pm >> Subject: proteome discoverer 1.1 to pepXML >> Reply to author | Forward | Print | Individual message | Show original >> | Report this message | Find messages by this author >> Hello everybody, >> >> I'm new to this group and in fact rather new to proteome data analysis >> as a whole. >> >> We are using Thermo's proteome discoverer at the lab, which gives .msf >> output files. >> I wanted to try the Ascore program to see whether this could help in >> localizing the phosphorylation site in peptides we measured. >> but this requires pepXML input. I've tried to find a converter >> for .msf into pepXML but it doesn't seem to exist, is that right? >> >> is there any possibility to extract a SEQUEST .out file from within >> proteome discoverer or any work-around to create pepXML from proteome >> discoverer results through other data output formats? >> >> thanks kindly for any help! >> Thomas >> >> student, University of Antwerp, Belgium >> >> -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To view this discussion on the web visit https://groups.google.com/d/msg/spctools-discuss/-/OSbcTMbII2MJ. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
