Will do. Thank you. On Wednesday, 26 September 2012 11:58:22 UTC-4, Chengpin Shen wrote: > > perhaps you can try scaffold > Chengpin > > > On Mon, Sep 24, 2012 at 9:15 PM, Suzanne <[email protected] > <javascript:>>wrote: > >> Hello. I am sorry if I missed the solution to the original question about >> converting "*.msf to *.pepXML" and using it in TPP. Was there a workaround >> to using *.msf files in TPP? >> >> Thank you. >> >> Suzanne >> >> >> >> On Wednesday, 8 August 2012 11:45:33 UTC-4, patrick Halvey wrote: >> >>> Hello. I came across this post while doing a google search for >>> "conversion of msf files to pepXML". I am trying to use Proteome Discoverer >>> output with a protein assembly tool called "IDpicker", but of course it is >>> impossible to export pepXML format from Proteome Discoverer. Has there been >>> a consensus reached on how to make the conversion to pepXML? Thanks >>> Patrick >>> >>> >>> On Tuesday, April 5, 2011 10:33:43 PM UTC-4, Christine Vogel wrote: >>> >>>> >>>> Hi All, >>>> >>>> Reposting Thomas' question from earlier -- what is a good converter >>>> from Thermo's .msf to TPP suitable files (i.e. pepXML)? >>>> >>>> I tried to find it on the list, and the discussion let me to here: >>>> >>>> https://github.com/itmat/**thermo_msf/blob/master/README.**rdoc#readme<https://github.com/itmat/thermo_msf/blob/master/README.rdoc#readme> >>>> >>>> >>>> But I am unable to successfully install/use this. Any help on this >>>> converter/installation? >>>> >>>> Thanks a lot, >>>> >>>> Christine >>>> >>>> >>>> ----- >>>> >>>> From: Thomas DV <[email protected]> >>>> Date: Sun, 5 Dec 2010 08:43:28 -0800 (PST) >>>> Local: Sun, Dec 5 2010 12:43 pm >>>> Subject: proteome discoverer 1.1 to pepXML >>>> Reply to author | Forward | Print | Individual message | Show original >>>> | Report this message | Find messages by this author >>>> Hello everybody, >>>> >>>> I'm new to this group and in fact rather new to proteome data analysis >>>> as a whole. >>>> >>>> We are using Thermo's proteome discoverer at the lab, which gives .msf >>>> output files. >>>> I wanted to try the Ascore program to see whether this could help in >>>> localizing the phosphorylation site in peptides we measured. >>>> but this requires pepXML input. I've tried to find a converter >>>> for .msf into pepXML but it doesn't seem to exist, is that right? >>>> >>>> is there any possibility to extract a SEQUEST .out file from within >>>> proteome discoverer or any work-around to create pepXML from proteome >>>> discoverer results through other data output formats? >>>> >>>> thanks kindly for any help! >>>> Thomas >>>> >>>> student, University of Antwerp, Belgium >>>> >>>> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To view this discussion on the web visit >> https://groups.google.com/d/msg/spctools-discuss/-/OSbcTMbII2MJ. >> To post to this group, send email to >> [email protected]<javascript:> >> . >> To unsubscribe from this group, send email to >> [email protected] <javascript:>. >> For more options, visit this group at >> http://groups.google.com/group/spctools-discuss?hl=en. >> > >
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