perhaps you can try scaffold Chengpin
On Mon, Sep 24, 2012 at 9:15 PM, Suzanne <[email protected]> wrote: > Hello. I am sorry if I missed the solution to the original question about > converting "*.msf to *.pepXML" and using it in TPP. Was there a workaround > to using *.msf files in TPP? > > Thank you. > > Suzanne > > > > On Wednesday, 8 August 2012 11:45:33 UTC-4, patrick Halvey wrote: > >> Hello. I came across this post while doing a google search for >> "conversion of msf files to pepXML". I am trying to use Proteome Discoverer >> output with a protein assembly tool called "IDpicker", but of course it is >> impossible to export pepXML format from Proteome Discoverer. Has there been >> a consensus reached on how to make the conversion to pepXML? Thanks >> Patrick >> >> >> On Tuesday, April 5, 2011 10:33:43 PM UTC-4, Christine Vogel wrote: >> >>> >>> Hi All, >>> >>> Reposting Thomas' question from earlier -- what is a good converter >>> from Thermo's .msf to TPP suitable files (i.e. pepXML)? >>> >>> I tried to find it on the list, and the discussion let me to here: >>> >>> https://github.com/itmat/**thermo_msf/blob/master/README.**rdoc#readme<https://github.com/itmat/thermo_msf/blob/master/README.rdoc#readme> >>> >>> But I am unable to successfully install/use this. Any help on this >>> converter/installation? >>> >>> Thanks a lot, >>> >>> Christine >>> >>> >>> ----- >>> >>> From: Thomas DV <[email protected]> >>> Date: Sun, 5 Dec 2010 08:43:28 -0800 (PST) >>> Local: Sun, Dec 5 2010 12:43 pm >>> Subject: proteome discoverer 1.1 to pepXML >>> Reply to author | Forward | Print | Individual message | Show original >>> | Report this message | Find messages by this author >>> Hello everybody, >>> >>> I'm new to this group and in fact rather new to proteome data analysis >>> as a whole. >>> >>> We are using Thermo's proteome discoverer at the lab, which gives .msf >>> output files. >>> I wanted to try the Ascore program to see whether this could help in >>> localizing the phosphorylation site in peptides we measured. >>> but this requires pepXML input. I've tried to find a converter >>> for .msf into pepXML but it doesn't seem to exist, is that right? >>> >>> is there any possibility to extract a SEQUEST .out file from within >>> proteome discoverer or any work-around to create pepXML from proteome >>> discoverer results through other data output formats? >>> >>> thanks kindly for any help! >>> Thomas >>> >>> student, University of Antwerp, Belgium >>> >>> -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To view this discussion on the web visit > https://groups.google.com/d/msg/spctools-discuss/-/OSbcTMbII2MJ. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]. > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
