Moving to proteowizard-support.
Yes this "bug" is still there. I didn't know about NCD. What is NCD a percent of? I.e. how can real
electronvolts be calculated?
Thanks for reporting,
-Matt
On 12/14/2012 5:43 PM, Dmitrii Tchekhovskoi wrote:
Software:
<software id="pwiz" version="3.0.3495">
<cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard" value=""/>
Instrument:
<cvParam cvRef="MS" accession="MS:1000556" name="LTQ Orbitrap XL" value=""/>
Filter line: "ITMS + c NSI d Full ms2 [email protected] [210.00-1615.00]"
Activation energy output:
<cvParam cvRef="MS" accession="MS:1000133" name="collision-induced dissociation"
value=""/>
<cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="35.0"
unitCvRef="UO"
unitAccession="UO:0000266" unitName="electronvolt"/>
*What is wrong: *
in case of ITMS, 35.0 is a so called "Normalized collision energy" (NCD); it is
measured in PERCENT
(%), not eV.
Therefore, unitName="electronvolt" is wrong.
I am wondering if this bug is still in msconvert.
Thank you in advance.
Dmitrii
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