Hello Philipp, I think it may be that the PepXMLViewer is timing out due to the large nature of your file -- how long would you say it takes before it fails? To test if this is the case, all you need to do is extend the Apache server TimeOut directive. (note that you will need to restart Apache after making this change to the config.) Let us know if that does the trick.
In the meantime, we'll add a feature request to be able to produce tab-delimited output of a pepXML from the command-line, much like the one that exists for protXML. Cheers, --Luis On Wed, Jul 24, 2013 at 12:19 PM, philipp (Overall Lab / UBC Vancouver) < [email protected]> wrote: > Hi all, > > I am running into trouble while trying to export large (>10,000 spectra) > pep.xml files from iprophet to tsv/excel using petunia. > The export starts and runs for a while until it stops with a blank page > and an incomplete .xls file. The max I could get was about 16,000 rows) > > PC and Mac using 4.6 rev 1 and developer build 201303151326 > > Is this a web server limitation? Any ideas how to fix this or work around > it? > Thanks > > Philipp > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/groups/opt_out. > > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/groups/opt_out.
