Hi Philipp, Glad that you caught the error. If you send me an offline message with which tag failed, I'll add that to the error reporting (which does need some work, as you can tell...)
Look for the feature in 4.7.0! Cheers, --Luis On Thu, Jul 25, 2013 at 3:01 PM, philipp (Overall Lab / UBC Vancouver) < [email protected]> wrote: > Hi Luis, > > That's what I had been thinking but the time before it failed seemed too > short (about 10 -20 sec). It turned out that not the size but some > malformed entries were the trouble makers. Problem solved, guess some error > catching and reporting could have helped though. > > tsv export from the command line would be an awesome small feature, > ideally at an optionally set fdr rate. > Philipp > > > On Thursday, July 25, 2013 2:46:34 PM UTC-7, Luis wrote: > >> Hello Philipp, >> >> I think it may be that the PepXMLViewer is timing out due to the large >> nature of your file -- how long would you say it takes before it fails? To >> test if this is the case, all you need to do is extend the Apache server >> TimeOut directive. (note that you will need to restart Apache after making >> this change to the config.) Let us know if that does the trick. >> >> In the meantime, we'll add a feature request to be able to produce >> tab-delimited output of a pepXML from the command-line, much like the one >> that exists for protXML. >> >> Cheers, >> --Luis >> >> >> >> On Wed, Jul 24, 2013 at 12:19 PM, philipp (Overall Lab / UBC Vancouver) < >> [email protected]> wrote: >> >>> Hi all, >>> >>> I am running into trouble while trying to export large (>10,000 spectra) >>> pep.xml files from iprophet to tsv/excel using petunia. >>> The export starts and runs for a while until it stops with a blank page >>> and an incomplete .xls file. The max I could get was about 16,000 rows) >>> >>> PC and Mac using 4.6 rev 1 and developer build 201303151326 >>> >>> Is this a web server limitation? Any ideas how to fix this or work >>> around it? >>> Thanks >>> >>> Philipp >>> >>> -- >>> You received this message because you are subscribed to the Google >>> Groups "spctools-discuss" group. >>> To unsubscribe from this group and stop receiving emails from it, send >>> an email to spctools-discu...@**googlegroups.com. >>> To post to this group, send email to spctools...@googlegroups.**com. >>> >>> Visit this group at >>> http://groups.google.com/**group/spctools-discuss<http://groups.google.com/group/spctools-discuss> >>> . >>> For more options, visit >>> https://groups.google.com/**groups/opt_out<https://groups.google.com/groups/opt_out> >>> . >>> >>> >>> >> >> -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/groups/opt_out. > > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/groups/opt_out.
