Puneet, https://groups.google.com/forum/#!topic/comet-ms/jUhIR5zWWcU
For Comet support, you need to be using TPP version 4.6.2 or newer. The current release is 4.6.3. You're current running 4.5.2. I just ran PeptideProphetParser from version 4.6.3 on your file and it processed fine. - Jimmy On Fri, Sep 27, 2013 at 10:32 PM, Punit Kadimi <[email protected]> wrote: > Hello > > I tried to run peptide prophet on a Comet .pep.xml output file but > peptide prophet is giving some error message. > > I am unable to figure out the problem. > > i am briefing out the process. > > (1) Searched a data set with comet.2012013.win64.exe using concatenated > database search option. > (2) run peptide prophet "*C:\Inetpub\tpp-bin>PeptideProphetParser.exe > 54ProtMix_S1R1.pep.xml*" > > after going through both of the steps it throws error message : > > (Comet) > init with Comet Trypsin > MS Instrument info: Manufacturer: unknown, Model: unknown, Ionization: > UNKNOWN, Analyzer: UNKNOWN, Detector: UNKNOWN > > PeptideProphet (TPP v4.5 RAPTURE rev 2, Build 201202031108 (MinGW)) > AKeller@ISB > read in 0 1+, 0 2+, 0 3+, 0 4+, 0 5+, 0 6+, and 0 7+ spectra. > read in no data. > > Can any one tell me please where i am going wrong . > > Thanks in advance > > Puneet > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/groups/opt_out. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/groups/opt_out.
