Hi Jimmy, Thanks for your active help, i did download the TPP_Setup_v4_6_2 and again ran the PeptideProphetParser.exe on same pep.xml file its working fine.
warm regards, puneet On Sat, Sep 28, 2013 at 9:43 PM, Jimmy Eng <[email protected]> wrote: > Puneet, > > https://groups.google.com/forum/#!topic/comet-ms/jUhIR5zWWcU > > For Comet support, you need to be using TPP version 4.6.2 or newer. The > current release is 4.6.3. You're current running 4.5.2. I just ran > PeptideProphetParser from version 4.6.3 on your file and it processed fine. > > - Jimmy > > > On Fri, Sep 27, 2013 at 10:32 PM, Punit Kadimi <[email protected]>wrote: > >> Hello >> >> I tried to run peptide prophet on a Comet .pep.xml output file but >> peptide prophet is giving some error message. >> >> I am unable to figure out the problem. >> >> i am briefing out the process. >> >> (1) Searched a data set with comet.2012013.win64.exe using concatenated >> database search option. >> (2) run peptide prophet "*C:\Inetpub\tpp-bin>PeptideProphetParser.exe >> 54ProtMix_S1R1.pep.xml*" >> >> after going through both of the steps it throws error message : >> >> (Comet) >> init with Comet Trypsin >> MS Instrument info: Manufacturer: unknown, Model: unknown, Ionization: >> UNKNOWN, Analyzer: UNKNOWN, Detector: UNKNOWN >> >> PeptideProphet (TPP v4.5 RAPTURE rev 2, Build 201202031108 (MinGW)) >> AKeller@ISB >> read in 0 1+, 0 2+, 0 3+, 0 4+, 0 5+, 0 6+, and 0 7+ spectra. >> read in no data. >> >> Can any one tell me please where i am going wrong . >> >> Thanks in advance >> >> Puneet >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected]. >> To post to this group, send email to [email protected]. >> Visit this group at http://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/groups/opt_out. >> > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/groups/opt_out. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/groups/opt_out.
