Hi Linda, Sorry that you are having trouble with this piece of software. Unfortunately, it does not seem that it is being maintained by the people who put this into TPP originally. We have therefore made the decision to stop distributing it, as we cannot support it. The only other suggestion I have is that it could have something to do with the Java version you are using -- perhaps an older one might work?
I would suggest contacting the original authors of the publication if you would like to try to use it. http://www.ncbi.nlm.nih.gov/pubmed/20413636 Thanks again for using the TPP, and wish you success in your research. --Luis On Thu, Oct 17, 2013 at 4:49 AM, Linda Switzar <[email protected]> wrote: > Dear Luis and/or anyone who may have the answer to this issue, > > I'm having the same problem with PepC as described here. I've downloaded > the html file and placed at the correct location, but still cannot view the > results (I also only get "PepC Relative Protein Quantitation"). I know > that the results are generated because I can see and edit them in the text > file (see attachment). I've checked all the posts related to PepC, but > could not find an answer. What can I do to get this to work? > > By the way, I also noticed an error in PepC because when I try to upload > the files for group B they are first added to the files for group A. Only > when I delete them there first, I can finally add them to group B. > > Hope to hear something soon! > > Linda > > On Tuesday, March 6, 2012 10:21:46 PM UTC+1, Luis wrote: > >> Hello, >> PepC was developed and added by external collaborators, so I am not an >> expert in its usage or installation. We will note this as an item to >> fix for our next release. In the meantime, I suggest going to this >> page to download the missing html file: >> http://sashimi.svn.sourceforge.net/viewvc/sashimi/trunk/trans_proteomic_ >> pipeline/src/Quantitation/Pepc/PepcView/src/com/ >> insilicos/public/PepcView.html?revision=4929&view=markup >> >> Click on the 'download' link and place the file under the >> C:\Inetpub\tpp-bin\PepcView\ folder, then try again. I really don't >> know if this will work, but it's worth a shot. >> >> Cheers, >> --Luis >> >> >> On Mon, Mar 5, 2012 at 11:44 PM, sunsun <[email protected]> wrote: >> > Dear TPP team, >> > I'm on a test run to check out PepC function in TPP. The PepC did run >> > successfully, but there is no where to check out the results now. >> > I'm using the latest TPP rapture version2, and I run through the X! >> > Tandem pipeline with two LC-MS/MS files in comparison. everything run >> > smoothly. However, when I chick the PepC results (the js file), the >> > webpage pop up with this message: >> > Not Found >> > The requested URL /tpp-bin/PepcView/PepcView.html was not found on >> > this server. >> > I'm pretty sure it's simply fix that I'm not aware of. >> > By the way, do I need both interact.pep.xml and interact.prot.xml for >> > PepC analysis? >> > >> > Thank you very much! >> > >> > -- >> > You received this message because you are subscribed to the Google >> Groups "spctools-discuss" group. >> > To post to this group, send email to [email protected]. >> > To unsubscribe from this group, send email to spctools-discu...@ >> googlegroups.com. >> >> > For more options, visit this group at http://groups.google.com/ >> group/spctools-discuss?hl=en. >> > >> >> -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/groups/opt_out. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/groups/opt_out.
