Thanks a lot David. I will definately look into that.

Kind regards,
Srihari Sharma

On Monday, January 20, 2014 11:27:27 AM UTC+10, srihari sharma wrote:
>
> Hello,
>
> I have a question with respect to decoy.
>
> The fasta files in my decoy files start as shown below,
>
> >sw|P84710_REVERSED|
>
> and my fasta files looks like as shown below
>
> >sw|P84710|
>
> Now the question is, while running the PeptideProphet step how do I tag 
> the reversed fasta file as decoy. In simple terms what tag do I need to add 
> in the below box for the reversed fasta file shown above?
>
> ->Use decoy hits to pin down the negative distribution. Decoy Protein 
> names begin with: (whitespace not allowed)
>
> Thanks a lot,
> Srihari Sharma
>

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