Hi Robert, I've prepared a patch containing changes made by Steven Lewis to Proteowizard's idconvert that should produce compliant output. The plan is to eventually incorporate these changes directly into Proteowizard. I could give you the patch and you could apply it to the Proteowizard support or I could try uploading the compiled program to our development area if you'd like to try it.
-Joe On Mon, Jun 23, 2014 at 11:00 AM, Robert <[email protected]> wrote: > Hi, is there any (known) way to generate ProteomeXchange compatible > mzIdentML files from TPP results? > > What I tried: mzML -> Comet -> PeptideProphet/ProteinProphet > interact...prot.xml with idConvert (ProteoWizard) -> mzid > However, the mzid is not standard compliant > I tried to convert the Comet output with PRIDE Converter, but the > conversion failed. > > Any hints for a workflow that produces standard conform output? > > Best, Robert > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- Joe Slagel Institute for Systems Biology [email protected] (206) 732-1362 -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
