Dear Joe,
great. I could test the patched version and give feedback on the
outcome (re-submission ProteomeXchange).
Best Regards,
Robert
On Mo 23 Jun 2014 13:11:35 CDT, Joseph Slagel wrote:
Hi Robert,
I've prepared a patch containing changes made by Steven Lewis to
Proteowizard's idconvert that should produce compliant output. The
plan is to eventually incorporate these changes directly into
Proteowizard. I could give you the patch and you could apply it to
the Proteowizard support or I could try uploading the compiled program
to our development area if you'd like to try it.
-Joe
On Mon, Jun 23, 2014 at 11:00 AM, Robert
<[email protected] <mailto:[email protected]>>
wrote:
Hi, is there any (known) way to generate ProteomeXchange
compatible mzIdentML files from TPP results?
What I tried: mzML -> Comet -> PeptideProphet/ProteinProphet
interact...prot.xml with idConvert (ProteoWizard) -> mzid
However, the mzid is not standard compliant
I tried to convert the Comet output with PRIDE Converter, but the
conversion failed.
Any hints for a workflow that produces standard conform output?
Best, Robert
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