Hi Robert, I just wanted to followup again on this. I updated the patch to match the latest version of Proteowizard and submitted it to the Proteowizard's developer mailing list in the hope they will review and accept the code. I haven't heard back yet from them, but if your need is still there you could make a inquiry on their support list.
The lists are at: https://sourceforge.net/p/proteowizard/mailman/ but I suspect [email protected] will get the email there. Cheers, Joe On Mon, Jun 23, 2014 at 11:00 AM, Robert <[email protected]> wrote: > Hi, is there any (known) way to generate ProteomeXchange compatible > mzIdentML files from TPP results? > > What I tried: mzML -> Comet -> PeptideProphet/ProteinProphet > interact...prot.xml with idConvert (ProteoWizard) -> mzid > However, the mzid is not standard compliant > I tried to convert the Comet output with PRIDE Converter, but the > conversion failed. > > Any hints for a workflow that produces standard conform output? > > Best, Robert > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- Joe Slagel Institute for Systems Biology [email protected] -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
