Hello Luis, Thank you for your fast reply.
Because of my broken english, these is something wrong transmiting of the word. I was tried to convert total 72 .dat files to .pep.xml with MASCOT2XML. Most files were completed the job with no error, but, 11 files were sized over 2.1Gb could not be convert to .pep.xml. with the syntax error (4). Actuallu, all files have no special character name like "( ), parenthesis?", but in the error masage the files were seem to be changed the file name in the program, I think. I used " ***.mzXML" Error massage " ***.mzXML(1)" As your mention, the important thing may not be the chaging of file name, but my system limit. Plz check my system. processor : Intel(R) Core(TM) i5-3470 CPU @ 3.20 GHz 3.20 GHz RAM : 4.00 GB system : 64bit and.. please tell me the check list that I have to do. thx again Regards, Heeyoun 2015년 3월 11일 수요일 오전 7시 50분 51초 UTC+9, Luis 님의 말: > Hello Heeyoun, > Depending on the system you are on, you could be running into a native > file size limit of 2Gb. Or it could be a malformed file; hard to tell > without further information. > Also, make sure that the mzXML file is in the expected location -- and we > would recommend not using any special characters in the file name (such as > parenthesis), especially as part of the name extension (i.e. make sure it > ends in ".mzXML"). > Cheers, > --Luis > > > On Sun, Mar 8, 2015 at 9:52 PM, Heeyoun Hwang <[email protected] > <javascript:>> wrote: > >> Hi, All >> >> I have tried to search several RAW files with MASCOT and TPP. >> Most files were searched over to protein prophet with no problem. >> but, some .dat files were able to convert to .pep.xml files depends on >> the size of their .mzXML files over 2.1Gb. >> I got same result from the command line and web version (TPP v.4.7) >> >> Welcome to your any advice. >> >> >> >> Command 9 [Mon Mar 9 13:27:39 2015] [ Show / Hide ] >> *EXECUTING: cd c:/Inetpub/wwwroot/ISB/data/HBRAINetd& >> c:\Inetpub\tpp-bin\Mascot2XML >> c:/Inetpub/wwwroot/ISB/data/HBRAINetd/20111216_EPT_S1_S2_10_ETD.dat >> -Dc:/Inetpub/wwwroot/ISB/data/HBRAINetd/nextprot_release_20150101.fasta >> -Etrypsin * >> >> filepath: c:/Inetpub/wwwroot/ISB/data/HBRAINetd/, extn: >> 20111216_EPT_S1_S2_10_ETD >> A stored as 71.0371 >> B stored as 114.535 >> C stored as 160.031 >> D stored as 115.027 >> E stored as 129.043 >> F stored as 147.068 >> G stored as 57.0215 >> H stored as 137.059 >> I stored as 113.084 >> J stored as 0 >> K stored as 128.095 >> L stored as 113.084 >> M stored as 131.04 >> N stored as 114.043 >> O stored as 0 >> P stored as 97.0528 >> Q stored as 128.059 >> R stored as 156.101 >> S stored as 87.032 >> T stored as 101.048 >> U stored as 150.954 >> V stored as 99.0684 >> W stored as 186.079 >> >> >> >> X stored as 111 >> Y stored as 163.063 >> Z stored as 128.551 >> c stored as 17.0027 >> n stored as 1.00783 >> variable modification 1, delta mass 42.0106 for Acetyl (K): >> residues: K >> nterm: 0 >> cterm: 0 >> protterm: 0 >> >> variable modification 2, delta mass 15.9949 for Oxidation (M): >> residues: M >> nterm: 0 >> cterm: 0 >> protterm: 0 >> >> c:/Inetpub/wwwroot/ISB/data/HBRAINetd/20111216_EPT_S1_S2_10_ETD.mzXML(1) : >> error 4: Syntax error parsing XML. >> >> >> *Command FAILED* >> RETURN CODE:63744 >> >> >> thanx and regards. >> >> Heeyoun Hwang. >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected] <javascript:>. >> To post to this group, send email to [email protected] >> <javascript:>. >> Visit this group at http://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/d/optout. >> > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
