Did you enter your input files on the "Refine/Combine Analyses" Petunia page? This is a different page from the "Analyze Peptides" page you ran the PeptideProphet analysis on.
Thanks, -David On Tue, May 23, 2017 at 1:21 AM, Yaarub Musa <[email protected]> wrote: > Hello David, > > Thanks a lot for your reply. > I have been trying to use iProphet for exaclty the purpose you mentioned. > I have search results from X!Tandem and comets that I would like to > combine. As you could see in the attached file, my input is 2 > interact.pep.xml files (one from Tandem, the second from comet) but the > iProphet process fails for "unkonwn error", as described in the attached > file. > > My data was acquired on QExactive Plus. When I repeat the process with > data acquired on TripleToF, the process is executed successfully. > > is there any specific search parameter that could eventually have hamper > iProphet process? > > best regards, > Yaarub > > > > On Monday, May 22, 2017 at 4:31:28 PM UTC+2, Yaarub Musa wrote: >> >> Hello Everyone, >> >> I have an issue with iProphet and I would be grateful if someone could >> help as I am new to TPP. >> >> I am trying running both tandem and comet search engine using QExactive >> Plus-acquired data and but I have been facing an issue with iProphet as the >> process fails. >> >> I have repeated the process with tutorial data (Shubert et al., 2015) >> where the data were acquired using TripleToF 5600 and all processes went >> through successfully. >> So I believe a certain parameter in my search is not compatible with >> iProphet ( I had to change some parameters as my data were acquired on >> QExactive). >> >> the iProphet process log is attached to this thread. I would appreciate >> any help. >> >> best regards, >> Yaarub >> >> -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at https://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
