Thanks Luis for the response! Adam
On Friday, November 10, 2017 at 2:30:33 PM UTC-6, Luis wrote: > > Hi Adam, > > We have plans to add some of these features to Libra as well as others, > but none are ready at the moment. > > One thing you could try is to select to normalize against the sum of the > reagent profiles (instead of selecting a channel to quantify against) -- > this should give you a value for all channels, even when some are missing. > > Cheers, > --Luis > > > On Fri, Nov 10, 2017 at 11:44 AM, Adam R <[email protected] <javascript:>> > wrote: > >> Is there a way to retain quantified peptides for the protein quant with >> Libra? I understand that Libra discards peptides without all >> channels...what about in instances where the you expect there to be little >> or no intensity? I have data from pulldowns where we don't expect to see >> much of the protein in the presence of a competitive inhibitor, so in this >> case it would be of use to retain such quants where the intensity is zero >> in the presence of inhibitor but several thousands in the pulldown >> channel...Is there a way to toggle on/off the peptides that are used for >> the protein quant in Libra? I'm thinking along the lines like in Xpress >> where you can toggle whether or not a peptide is used for the protein >> quant. Is there also a way to modify the number of standard deviations that >> are used to discard a peptide from being used in the protein quant? >> >> Best, >> >> Adam >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected] <javascript:>. >> To post to this group, send email to [email protected] >> <javascript:>. >> Visit this group at https://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/d/optout. >> > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
