Dear David,

Thank you for your answer.

I have joined to this message an example pepXML snippet which produces the 
following warning:




*WARNING: Illegal PTM-shuffled peptide detected with non-matching mass: 
KGDRSPEPGQTWTR    Neutral Mass (from pepXML) = 1693.76    Neutral Computed 
Mass for Evaluation = 1613.79    PPM difference = 47212.4*
Please let me know if it is sufficient and have great end-of-year holidays !

Cheers,

Thibault

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Attachment: example.xml
Description: XML document

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