Hello Thibault, You should be able to use msconvert to convert the mgf file to an mzML file. You can then search the mzML instead of the mgf to avoid any issues with spectrum naming conventions.
Cheers, -David On Thu, Jan 11, 2018 at 2:50 AM, Thibault Robin <[email protected]> wrote: > Dear David. > > Thank you very much for the clarification and your time. > > I just have a last issue regarding the conversion to pepXML. For one of my > experiments I only have mgf files at my disposal and will never have access > to the original raw files. > In this case is it still possible to use Tandem2XML to convert my results > files to pepXML ? I got a "Unknown file type." error when I tried. How > could this be fixed ? > > Cheers, > > Thibault > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at https://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
