Dear David.

Thank you very much for the clarification and your time. 

I just have a last issue regarding the conversion to pepXML. For one of my 
experiments I only have mgf files at my disposal and will never have access 
to the original raw files. 
In this case is it still possible to use Tandem2XML to convert my results 
files to pepXML ? I got a "Unknown file type." error when I tried. How 
could this be fixed ?

Cheers,

Thibault

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