Could this be windows line endings? Have you tried to run dos2unix command on your fasta file?
Thanks, -David On Tue, Nov 20, 2018 at 7:41 AM Robert Winkler < [email protected]> wrote: > This is what I try to find out at the moment. head and tail look fine. The > DB consists of 3 individual DBs. 2 of them look fine. The UniRef50 could be > the problem but I cannot check it manually. Information about the "strange" > output would help. > > > *Robert Winkler* > E // [email protected] > <https://link.getmailspring.com/link/[email protected]/0?redirect=mailto%3Arobert.winkler%40bioprocess.org&recipient=c3BjdG9vbHMtZGlzY3Vzc0Bnb29nbGVncm91cHMuY29t> > P // +49-(0) 174 73 23 117 (Signal.org) > <https://link.getmailspring.com/link/[email protected]/1?redirect=tel%3A%2B49-(0)%20174%2073%2023%20117%20(Signal.org)&recipient=c3BjdG9vbHMtZGlzY3Vzc0Bnb29nbGVncm91cHMuY29t> > On Nov 20 2018, at 4:31 pm, Eric Deutsch <[email protected]> > wrote: > > > Hi Robert, I think this warning comes when the FASTA database has > unexpected characters in it. Is there anything unusual about the FASTA > database you’re using? Unusual spaces or something? > > > > Regards, > > Eric > > > > > > *From:* [email protected] > <https://link.getmailspring.com/link/[email protected]/2?redirect=mailto%3Aspctools-discuss%40googlegroups.com&recipient=c3BjdG9vbHMtZGlzY3Vzc0Bnb29nbGVncm91cHMuY29t> > <[email protected] > <https://link.getmailspring.com/link/[email protected]/3?redirect=mailto%3Aspctools-discuss%40googlegroups.com&recipient=c3BjdG9vbHMtZGlzY3Vzc0Bnb29nbGVncm91cHMuY29t>> > *On Behalf Of *Robert > *Sent:* Tuesday, November 20, 2018 5:50 AM > *To:* spctools-discuss <[email protected] > <https://link.getmailspring.com/link/[email protected]/4?redirect=mailto%3Aspctools-discuss%40googlegroups.com&recipient=c3BjdG9vbHMtZGlzY3Vzc0Bnb29nbGVncm91cHMuY29t> > > > *Subject:* [spctools-discuss] TPP 5.2 ProteinProphet WARNING: Trying to > compute mass of non-residue: > > > Hi, I am testing the docker version of TPP 5.2 on Windows 10, > works fine so far, but in the ProteinProphet step appears a warning (I > stopped the script after several minutes of the warning message running). > WARNING: Trying to compute mass of non-residue: > WARNING: Trying to compute mass of non-residue: > WARNING: Trying to compute mass of non-residue: > WARNING: Trying to compute mass of non-residue: > WARNING: Trying to compute mass of non-residue: > Any idea how to track down the error (I suppose a strange symbol??)? > Best, Robert > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected] > <https://link.getmailspring.com/link/[email protected]/5?redirect=mailto%3Aspctools-discuss%2Bunsubscribe%40googlegroups.com&recipient=c3BjdG9vbHMtZGlzY3Vzc0Bnb29nbGVncm91cHMuY29t> > . > To post to this group, send email to [email protected] > <https://link.getmailspring.com/link/[email protected]/6?redirect=mailto%3Aspctools-discuss%40googlegroups.com&recipient=c3BjdG9vbHMtZGlzY3Vzc0Bnb29nbGVncm91cHMuY29t> > . > Visit this group at https://groups.google.com/group/spctools-discuss > <https://link.getmailspring.com/link/[email protected]/7?redirect=https%3A%2F%2Fgroups.google.com%2Fgroup%2Fspctools-discuss&recipient=c3BjdG9vbHMtZGlzY3Vzc0Bnb29nbGVncm91cHMuY29t> > . > For more options, visit https://groups.google.com/d/optout > <https://link.getmailspring.com/link/[email protected]/8?redirect=https%3A%2F%2Fgroups.google.com%2Fd%2Foptout&recipient=c3BjdG9vbHMtZGlzY3Vzc0Bnb29nbGVncm91cHMuY29t> > . > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected] > <https://link.getmailspring.com/link/[email protected]/9?redirect=mailto%3Aspctools-discuss%2Bunsubscribe%40googlegroups.com&recipient=c3BjdG9vbHMtZGlzY3Vzc0Bnb29nbGVncm91cHMuY29t> > . > To post to this group, send email to [email protected] > <https://link.getmailspring.com/link/[email protected]/10?redirect=mailto%3Aspctools-discuss%40googlegroups.com&recipient=c3BjdG9vbHMtZGlzY3Vzc0Bnb29nbGVncm91cHMuY29t> > . > Visit this group at https://groups.google.com/group/spctools-discuss > <https://link.getmailspring.com/link/[email protected]/11?redirect=https%3A%2F%2Fgroups.google.com%2Fgroup%2Fspctools-discuss&recipient=c3BjdG9vbHMtZGlzY3Vzc0Bnb29nbGVncm91cHMuY29t> > . > For more options, visit https://groups.google.com/d/optout > <https://link.getmailspring.com/link/[email protected]/12?redirect=https%3A%2F%2Fgroups.google.com%2Fd%2Foptout&recipient=c3BjdG9vbHMtZGlzY3Vzc0Bnb29nbGVncm91cHMuY29t> > . > > [image: Open Tracking] > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at https://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. 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