Thanks David, you are right, this was a WinLin problem! Am Dienstag, 20. November 2018 17:04:35 UTC+1 schrieb David Shteynberg: > > Could this be windows line endings? Have you tried to run dos2unix > command on your fasta file? > > Thanks, > -David > > On Tue, Nov 20, 2018 at 7:41 AM Robert Winkler <[email protected] > <javascript:>> wrote: > >> This is what I try to find out at the moment. head and tail look fine. >> The DB consists of 3 individual DBs. 2 of them look fine. The UniRef50 >> could be the problem but I cannot check it manually. Information about the >> "strange" output would help. >> >> >> *Robert Winkler* >> E // [email protected] >> <https://link.getmailspring.com/link/[email protected]/0?redirect=mailto%3Arobert.winkler%40bioprocess.org&recipient=c3BjdG9vbHMtZGlzY3Vzc0Bnb29nbGVncm91cHMuY29t> >> P // +49-(0) 174 73 23 117 (Signal.org) >> <https://link.getmailspring.com/link/[email protected]/1?redirect=tel%3A%2B49-(0)%20174%2073%2023%20117%20(Signal.org)&recipient=c3BjdG9vbHMtZGlzY3Vzc0Bnb29nbGVncm91cHMuY29t> >> On Nov 20 2018, at 4:31 pm, Eric Deutsch <[email protected] >> <javascript:>> wrote: >> >> >> Hi Robert, I think this warning comes when the FASTA database has >> unexpected characters in it. Is there anything unusual about the FASTA >> database you’re using? Unusual spaces or something? >> >> >> >> Regards, >> >> Eric >> >> >> >> >> >> *From:* [email protected] >> <https://link.getmailspring.com/link/[email protected]/2?redirect=mailto%3Aspctools-discuss%40googlegroups.com&recipient=c3BjdG9vbHMtZGlzY3Vzc0Bnb29nbGVncm91cHMuY29t> >> >> <[email protected] >> <https://link.getmailspring.com/link/[email protected]/3?redirect=mailto%3Aspctools-discuss%40googlegroups.com&recipient=c3BjdG9vbHMtZGlzY3Vzc0Bnb29nbGVncm91cHMuY29t>> >> >> *On Behalf Of *Robert >> *Sent:* Tuesday, November 20, 2018 5:50 AM >> *To:* spctools-discuss <[email protected] >> <https://link.getmailspring.com/link/[email protected]/4?redirect=mailto%3Aspctools-discuss%40googlegroups.com&recipient=c3BjdG9vbHMtZGlzY3Vzc0Bnb29nbGVncm91cHMuY29t> >> > >> *Subject:* [spctools-discuss] TPP 5.2 ProteinProphet WARNING: Trying to >> compute mass of non-residue: >> >> >> Hi, I am testing the docker version of TPP 5.2 on Windows 10, >> works fine so far, but in the ProteinProphet step appears a warning (I >> stopped the script after several minutes of the warning message running). >> WARNING: Trying to compute mass of non-residue: >> WARNING: Trying to compute mass of non-residue: >> WARNING: Trying to compute mass of non-residue: >> WARNING: Trying to compute mass of non-residue: >> WARNING: Trying to compute mass of non-residue: >> Any idea how to track down the error (I suppose a strange symbol??)? >> Best, Robert >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected] >> <https://link.getmailspring.com/link/[email protected]/5?redirect=mailto%3Aspctools-discuss%2Bunsubscribe%40googlegroups.com&recipient=c3BjdG9vbHMtZGlzY3Vzc0Bnb29nbGVncm91cHMuY29t> >> . >> To post to this group, send email to [email protected] >> <https://link.getmailspring.com/link/[email protected]/6?redirect=mailto%3Aspctools-discuss%40googlegroups.com&recipient=c3BjdG9vbHMtZGlzY3Vzc0Bnb29nbGVncm91cHMuY29t> >> . >> Visit this group at https://groups.google.com/group/spctools-discuss >> <https://link.getmailspring.com/link/[email protected]/7?redirect=https%3A%2F%2Fgroups.google.com%2Fgroup%2Fspctools-discuss&recipient=c3BjdG9vbHMtZGlzY3Vzc0Bnb29nbGVncm91cHMuY29t> >> . >> For more options, visit https://groups.google.com/d/optout >> <https://link.getmailspring.com/link/[email protected]/8?redirect=https%3A%2F%2Fgroups.google.com%2Fd%2Foptout&recipient=c3BjdG9vbHMtZGlzY3Vzc0Bnb29nbGVncm91cHMuY29t> >> . >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected] >> <https://link.getmailspring.com/link/[email protected]/9?redirect=mailto%3Aspctools-discuss%2Bunsubscribe%40googlegroups.com&recipient=c3BjdG9vbHMtZGlzY3Vzc0Bnb29nbGVncm91cHMuY29t> >> . >> To post to this group, send email to [email protected] >> <https://link.getmailspring.com/link/[email protected]/10?redirect=mailto%3Aspctools-discuss%40googlegroups.com&recipient=c3BjdG9vbHMtZGlzY3Vzc0Bnb29nbGVncm91cHMuY29t> >> . >> Visit this group at https://groups.google.com/group/spctools-discuss >> <https://link.getmailspring.com/link/[email protected]/11?redirect=https%3A%2F%2Fgroups.google.com%2Fgroup%2Fspctools-discuss&recipient=c3BjdG9vbHMtZGlzY3Vzc0Bnb29nbGVncm91cHMuY29t> >> . >> For more options, visit https://groups.google.com/d/optout >> <https://link.getmailspring.com/link/[email protected]/12?redirect=https%3A%2F%2Fgroups.google.com%2Fd%2Foptout&recipient=c3BjdG9vbHMtZGlzY3Vzc0Bnb29nbGVncm91cHMuY29t> >> . >> >> [image: Open Tracking] >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected] <javascript:>. >> To post to this group, send email to [email protected] >> <javascript:>. >> Visit this group at https://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/d/optout. >> >
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