Mark Wilkinson wrote: > Hi hackers, > > Another oddity just popped-up. Probably best if you run this workflow > yourselves to see the problem (attached) - use input "hsa:7097" as the > value for the input "id" slot. > > About half of the output bins contain no data, though the output of the > node that feeds into that bin is clearly full and happy... I can't see > any obvious difference between the bins that contain data and the bins > that don't... > > ?? > > This is the workflow we are going to be doing our Taverna training > course on next week, so... umm.... it would be good if it worked!
When I run this workflow with Taverna 2.1 beta 2 (on OS X), the CreateKeggId activity fails with: Exception in thread "BioMOBY GetOntologyThread" java.lang.NoClassDefFoundError com.hp.hpl.jena.rdf.model.impl.ModelCom.<init>(ModelCom.java:51) com.hp.hpl.jena.rdf.model.ModelFactory.createDefaultModel(ModelFactory.java:124) com.hp.hpl.jena.rdf.model.ModelFactory.createDefaultModel(ModelFactory.java:118) org.biomoby.shared.extended.DataTypeParser.getMobyDataTypesFromRDF(DataTypeParser.java:156) org.biomoby.client.CentralDigestCachedImpl.fillDataTypesCache(CentralDigestCachedImpl.java:141) org.biomoby.client.CentralDigestCachedSimpleImpl.updateCache(CentralDigestCachedSimpleImpl.java:190) net.sf.taverna.t2.activities.biomoby.BiomobyCache.cacheForRegistry(BiomobyCache.java:49) net.sf.taverna.t2.activities.biomoby.BiomobyCache.cacheForRegistryEndpoint(BiomobyCache.java:75) net.sf.taverna.t2.activities.biomoby.GetOntologyThread.run(GetOntologyThread.java:57) David. -- David Withers School of Computer Science, University of Manchester, Oxford Road, Manchester, M13 9PL, UK. +44 (0)161 275 0683 ------------------------------------------------------------------------------ Enter the BlackBerry Developer Challenge This is your chance to win up to $100,000 in prizes! For a limited time, vendors submitting new applications to BlackBerry App World(TM) will have the opportunity to enter the BlackBerry Developer Challenge. See full prize details at: http://p.sf.net/sfu/Challenge _______________________________________________ taverna-hackers mailing list [email protected] Web site: http://www.taverna.org.uk Mailing lists: http://www.taverna.org.uk/taverna-mailing-lists/ Developers Guide: http://www.mygrid.org.uk/tools/developer-information
