On Wed, Jul 8, 2009 at 18:25, Mark Wilkinson<[email protected]> wrote:
> Another oddity just popped-up. Probably best if you run this workflow > yourselves to see the problem (attached) - use input "hsa:7097" as the value > for the input "id" slot. > > About half of the output bins contain no data, though the output of the node > that feeds into that bin is clearly full and happy... I can't see any > obvious difference between the bins that contain data and the bins that > don't... I had a similar problem the other day - some of the output ports didn't show the result values - but when I clicked for the intermediate results of the processor feeding to that port, there's output there. Also if I add a dummy processor in the middle (Echo list) before the workflow output port, then I do get to see the value. In the workflow I used the outputs came from an XML splitter, so all the values should have come.. The workflow I used was using a caGrid plugin, so there's not much point in sharing it here, but I can try to find a similar one. Could it possibly have something to do with the 'Workflow finished' sign? Do the output bins (good name, Mark!) stop receiving the outputs at some point? I can replicate the empty bins, but I have no idea what KEGG ID to use as no example was provided, I tried using "path:hsa05216". What I find is that most of the processors don't seem to have run (they are not greyed out) - but it still says 'Workflow complete'. Could there be something with error handling within the BioMoby activity that is not working as expected? (Note developers - as this is a Moby workflow it's affected by T2-602 and intermediate values don't work) It seems everything from ConvertSnp2EntrezGeneID and below don't run - but I don't get any warnings or errors on the console, even though I've turned up logging. We would need to run this one through a debugger to see what is really going on.. I'll see if anyone here has time to do that. I've created a bug: http://www.mygrid.org.uk/dev/issues/browse/T2-694 BTW Mark - why did you rename the workflow file from .t2flow to .xml ..? -- Stian Soiland-Reyes, myGrid team School of Computer Science The University of Manchester ------------------------------------------------------------------------------ Enter the BlackBerry Developer Challenge This is your chance to win up to $100,000 in prizes! For a limited time, vendors submitting new applications to BlackBerry App World(TM) will have the opportunity to enter the BlackBerry Developer Challenge. See full prize details at: http://p.sf.net/sfu/Challenge _______________________________________________ taverna-hackers mailing list [email protected] Web site: http://www.taverna.org.uk Mailing lists: http://www.taverna.org.uk/taverna-mailing-lists/ Developers Guide: http://www.mygrid.org.uk/tools/developer-information
