OK, sounds like there might be something we can work on here then. Stian - I'll put our guy directly in touch with you so that together you can work something out as to how he could contribute.
cheers, Richard On 22 Jan 2010, at 13:18, Stian Soiland-Reyes wrote: > Scufl2 is meant to describe tavernalike datadriven worldliest, so if the hive > workflow structure is significantly similar it might be doable, yes. > > We are planning to make the workbench edit scufl2 models rather than t2core > execution objects as of today. > > There are bound to be differences, like how lists are iterated over or how > service implementations are defined. Part of our scufl2 plan was to allow > several alternative bindings of activities. > > Other differences could be dealt with by some kind of baseline, like a common > set of possible workflows, and other more specialised baselines that are not > crossengine compatible. > > Buy yeah, sounds exciting! > > We're also thinking along similar lines working with Meandre. > > >> On 22 Jan 2010 10:40, "Richard Holland" <[email protected]> wrote: >> >> Hi all, >> >> As some of you might know, at Eagle we use Ensembl Hive to construct >> pipelines that can be deployed on clusters/clouds. It has essentially the >> same concepts as Taverna, but configuring it is a nightmare combination of >> Perl modules and records in database tables. >> >> We want to be able to describe a workflow/pipeline using a formal language >> (preferably within a GUI so we don't have to go using a text editor to do >> it) then convert it into Hive config files programmatically. Or, convert it >> into Taverna - but using the same workflow description document format >> regardless of which system the pipeline is intended for. >> >> >From Stian's email below, I see that the SCUFL format is currently being >> >redesigned to produce SCUFL2. Is it intended to represent generic pipelines >> >or is it Taverna specific? >> >> If it is supposed to be generic, we'd like to offer to help. We'd do the >> SCUFL2-Hive conversion tool ourselves, but we'd work with you on defining >> SCUFL2 such that it can satisfactorily represent both Taverna and Hive >> workflows. We could also put some time towards developing the >> SCUFL2-building GUI, if you have one planned. >> >> We have some free developer time coming up for a few days in Feb and March, >> which we could contribute to you (for free) to help develop the SCUFL2 >> format. A few days (we're talking maybe 2 weeks max) is not much time really >> on a project like this but we hope it would help in some way. >> >> What do you all think? >> >> cheers, >> Richard >> On 6 Jan 2010, at 10:47, Stian Soiland-Reyes wrote: > Hi! > > We're working >> on making the new SCU... >> >> > ------------------------------------------------------------------------------ >> > > This SF.Net email... >> >> > [email protected] >> >> > Web site: http://www.taverna.org.uk > Mailing lists: >> > http://www.taverna.org.uk/taverna-mailing-lis... >> >> > Developers Guide: http://www.mygrid.org.uk/tools/developer-information >> >> -- >> Richard Holland, BSc MBCS >> Operations and Delivery Director, Eagle Genomics Ltd >> T: +44 (0)1223 654481 ext 3 | E: [email protected] >> http://www.eaglegenomics.com/ >> >> >> ------------------------------------------------------------------------------ >> Throughout its 18-year history, RSA Conference consistently attracts the >> world's best and brightest in the field, creating opportunities for >> Conference >> attendees to learn about information security's most important issues through >> interactions with peers, luminaries and emerging and established companies. >> http://p.sf.net/sfu/rsaconf-dev2dev >> _______________________________________________ >> taverna-hackers mailing list >> [email protected] >> >> Web site: http://www.taverna.org.uk Mailing lists: >> http://www.taverna.org.uk/taverna-mailing-lists/ >> >> Developers Guide: http://www.mygrid.org.uk/tools/developer-information > > ------------------------------------------------------------------------------ > Throughout its 18-year history, RSA Conference consistently attracts the > world's best and brightest in the field, creating opportunities for Conference > attendees to learn about information security's most important issues through > interactions with peers, luminaries and emerging and established companies. > http://p.sf.net/sfu/rsaconf-dev2dev_______________________________________________ > taverna-hackers mailing list > [email protected] > Web site: http://www.taverna.org.uk > Mailing lists: http://www.taverna.org.uk/taverna-mailing-lists/ > Developers Guide: http://www.mygrid.org.uk/tools/developer-information -- Richard Holland, BSc MBCS Operations and Delivery Director, Eagle Genomics Ltd T: +44 (0)1223 654481 ext 3 | E: [email protected] http://www.eaglegenomics.com/ ------------------------------------------------------------------------------ Throughout its 18-year history, RSA Conference consistently attracts the world's best and brightest in the field, creating opportunities for Conference attendees to learn about information security's most important issues through interactions with peers, luminaries and emerging and established companies. http://p.sf.net/sfu/rsaconf-dev2dev _______________________________________________ taverna-hackers mailing list [email protected] Web site: http://www.taverna.org.uk Mailing lists: http://www.taverna.org.uk/taverna-mailing-lists/ Developers Guide: http://www.mygrid.org.uk/tools/developer-information
