This sounds a bit like the "remote control" envisioned for TiddlySlidy.
I'm not sure about the status of that, but could imagine various options
I didn't mention the most obvious one - good ol' popups:
http://fnd.lewcid.org/misc/RemoteControlMacro.html
(just a quick proof of concept)
Clicking the "remote control" button should open a new window. If your
browser opens a new tab instead, you might wanna drag that to a
new/different window. (Some browsers might block popups altogether.)
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