Thanks Ted. I ended up installing a virtual Windows machine, installing the plug-in there, and got it to work well! It's a really awesome and helpful too. Thanks for following up.
On Mon, Sep 25, 2017 at 5:36 AM, Ted Pedersen duluth...@gmail.com [umls-similarity] <umls-similarity@yahoogroups.com> wrote: > > > Hi Jen, > > Sorry for not seeing this any sooner - I don't have any experience with > Macs and so don't have a lot of suggestions here. Hopefully others do and > can share or have already said something... > > Good luck, > Ted > > On Mon, Sep 11, 2017 at 4:54 PM, Jennifer Wilson jen.wilson...@gmail.com > [umls-similarity] <umls-similarity@yahoogroups.com> wrote: > >> >> >> Hi Bridget and Raviteja, >> >> Thanks for this resource, it seems super cool! I am personally working on >> a Mac and attempted installing the .exe using WineBottler. The mmlite >> software doesn't yet work for me - do you have any suggestions for making >> it Mac-friendly? >> >> Thanks, >> >> On Thu, Sep 7, 2017 at 10:40 AM, Bridget McInnes btmcin...@gmail.com >> [umls-similarity] <umls-similarity@yahoogroups.com> wrote: >> >>> >>> >>> Hello everyone, >>> >>> >>> Here is an email from Ravi about MetaMap Lite excel : >>> >>> >>> >>> The program is available at >>>> tinyurl.com/mmlite-excel >>>> It just points to my DropBox, at the moment. >>>> >>>> It comes packaged with UMLS level zero subset for licensing reasons. >>>> But you can easily swap it out for the full UMLS subset from >>>> MetaMapLite distribution. >>>> >>>> Let me know, if you have any issues. >>>> >>>> Ravi Teja. >>> >>> >>> >>> >>> I have cced him on this email as well so that you have his contact >>> information. >>> >>> >>> Best regards, >>> >>> >>> Bridget >>> >>> On Thu, Sep 7, 2017 at 8:37 AM, Bridget McInnes <btmcin...@gmail.com> >>> wrote: >>> >>>> Hello Jennifer, >>>> >>>> Like Ted mentioned, the UMLS-Similarity package requires that the term >>>> be located in the UMLS as an exact match. When I deal with terms, I >>>> typically use metamap to identify the CUIs of a particular term that I am >>>> looking for. There is a nice program recently released with an xcel plug in >>>> written by Ravi Bhupatiraju at NLM. Here is the poster description: >>>> >>>> https://mor.nlm.nih.gov/pubs/pdf/2017-medinfo-rb-poster.pdf >>>> >>>> >>>> and a link to MetaMapLite web page. >>>> >>>> https://metamap.nlm.nih.gov/MetaMapLite.shtml >>>> >>>> >>>> I hope this might help! >>>> >>>> Best regards, >>>> >>>> Bridget >>>> >>>> On Tue, Sep 5, 2017 at 1:02 PM, Jennifer Wilson jen.wilson...@gmail.com >>>> [umls-similarity] <umls-similarity@yahoogroups.com> wrote: >>>> >>>>> >>>>> >>>>> Hey Ted, >>>>> >>>>> Thanks again for looking at this. Again, any and all advice are >>>>> appreciated. Right now, I'm doing a less-than-ideal approach of querying >>>>> for similarity, and then if there is none, I do a back-up check by looking >>>>> for overlapping words. This means I can catch "Diabetes" and "type 2 >>>>> diabetes" but it does require manual curation to make sure I'm not getting >>>>> erroneous overlaps! >>>>> >>>>> Best, >>>>> >>>>> On Sun, Sep 3, 2017 at 7:52 PM, Ted Pedersen duluth...@gmail.com >>>>> [umls-similarity] <umls-similarity@yahoogroups.com> wrote: >>>>> >>>>>> >>>>>> >>>>>> Hi Jen, >>>>>> >>>>>> I'm going to answer your question in a few notes maybe over the next >>>>>> few days...so your first problem with finding a term is not unusual - >>>>>> sometimes small variations in a term can cause a lookup to fail. I >>>>>> usually >>>>>> try to work with Cuis as a result. In your example for whatever reason >>>>>> the >>>>>> (t2d) seems to be causing a problem - when I omit that things seem to >>>>>> work >>>>>> ok... >>>>>> >>>>>> More soon! >>>>>> Ted >>>>>> >>>>>> tpederse@maraca:~$ getAssociatedCuis.pl 'type 2 diabetes mellitus' >>>>>> >>>>>> >>>>>> UMLS-Interface Configuration Information: >>>>>> (Default Information - no config file) >>>>>> >>>>>> Sources (SAB): >>>>>> MSH >>>>>> Relations (REL): >>>>>> PAR >>>>>> CHD >>>>>> >>>>>> Sources (SABDEF): >>>>>> UMLS_ALL >>>>>> Relations (RELDEF): >>>>>> UMLS_ALL >>>>>> >>>>>> >>>>>> The CUIs associated with type 2 diabetes mellitus are: >>>>>> 1. c0011860raviteja.bhupatir...@nih.gov >>>>>> tpederse@maraca:~$ getAssociatedCuis.pl 'type 2 diabetes mellitus >>>>>> (t2d)' >>>>>> >>>>>> >>>>>> UMLS-Interface Configuration Information: >>>>>> (Default Information - no config file) >>>>>> >>>>>> Sources (SAB): >>>>>> MSH >>>>>> Relations (REL): >>>>>> PAR >>>>>> CHD >>>>>> >>>>>> Sources (SABDEF): >>>>>> UMLS_ALL >>>>>> Relations (RELDEF): >>>>>> UMLS_ALL >>>>>> >>>>>> >>>>>> No CUIs are associated with type 2 diabetes mellitus (t2d). >>>>>> tpederse@maraca:~$ getAssociatedCuis.pl 'type 2 diabetes mellitus' >>>>>> >>>>>> >>>>>> UMLS-Interface Configuration Information: >>>>>> (Default Information - no config file) >>>>>> >>>>>> Sources (SAB): >>>>>> MSH >>>>>> Relations (REL): >>>>>> PAR >>>>>> CHD >>>>>> >>>>>> Sources (SABDEF): >>>>>> UMLS_ALL >>>>>> Relations (RELDEF): >>>>>> UMLS_ALL >>>>>> >>>>>> >>>>>> The CUIs associated with type 2 diabetes mellitus are: >>>>>> 1. C0011860 >>>>>> tpederse@maraca:~$ getChildren.pl 'type 2 diabetes mellitus' >>>>>> >>>>>> >>>>>> UMLS-Interface Configuration Information: >>>>>> (Default Information - no config file) >>>>>> >>>>>> Sources (SAB): >>>>>> MSH >>>>>> Relations (REL): >>>>>> PAR >>>>>> CHD >>>>>> >>>>>> Sources (SABDEF): >>>>>> UMLS_ALL >>>>>> Relations (RELDEF): >>>>>> UMLS_ALL >>>>>> >>>>>> >>>>>> The children of type 2 diabetes mellitus (C0011860) are: >>>>>> lipoatrophic diabetes (C0011859) >>>>>> tpederse@maraca:~$ getChildren.pl 'type 2 diabetes mellitus (t2d)' >>>>>> >>>>>> >>>>>> UMLS-Interface Configuration Information: >>>>>> (Default Information - no config file) >>>>>> >>>>>> Sources (SAB): >>>>>> MSH >>>>>> Relations (REL): >>>>>> PAR >>>>>> CHD >>>>>> >>>>>> Sources (SABDEF): >>>>>> UMLS_ALL >>>>>> Relations (RELDEF): >>>>>> UMLS_ALL >>>>>> >>>>>> >>>>>> Input type 2 diabetes mellitus (t2d) does not exist in this view of >>>>>> the UMLS. >>>>>> >>>>>> >>>>>> On Thu, Aug 31, 2017 at 4:03 PM, Jennifer Wilson >>>>>> jen.wilson...@gmail.com [umls-similarity] < >>>>>> umls-similarity@yahoogroups.com> wrote: >>>>>> >>>>>>> >>>>>>> >>>>>>> Hi Ted, >>>>>>> >>>>>>> You've been incredibly helpful, on this whole project. Thanks for >>>>>>> that. >>>>>>> >>>>>>> Part of my problem was that I was avoiding installing the full UMLS >>>>>>> distribution because of storage, and then had a lot of trouble getting >>>>>>> it >>>>>>> downloaded, installed, and set up on my computer! But having access to >>>>>>> the >>>>>>> UMLS::Interface and UMLS::Similarity scripts is really helpful. >>>>>>> >>>>>>> I'm now at a more specific use of the UMLS in my project. I have a >>>>>>> list of drugs with their disease indications (*most *map to a CUI >>>>>>> term) and then for each drug I have predicted a list of disease for >>>>>>> which >>>>>>> the drugs could be used. I want to know "how semantically similar" are >>>>>>> my >>>>>>> predictions to the original diseases (to check how often my algorithm is >>>>>>> "right"). >>>>>>> >>>>>>> There are few bugs in that for some reason, some diseases return an >>>>>>> error that a CUI doesn't exist, even though, I can find a CUI for the >>>>>>> disease in my umls database: >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> *getChildren.pl 'type 2 diabetes mellitus (t2d)'...Input type 2 >>>>>>> diabetes mellitus (t2d) does not exist in this view of the UMLS.* >>>>>>> I also don't always get a match between diseases that I think are >>>>>>> semantically similar, is this just a product of how the hierarchy >>>>>>> works? I >>>>>>> would like to capture these as matches if possible! >>>>>>> >>>>>>> >>>>>>> *Hormone receptor positive malignant neoplasm of breast (C1562029) & >>>>>>> Breast Carcinoma (C0678222) = -1* >>>>>>> Also, because I am new to perl, I have been using the --infile >>>>>>> option (for instance with getAssociatedCuis.pl script), piping the >>>>>>> output >>>>>>> to a text file and then using Python to awkwardly extract the disease -> >>>>>>> CUI mappings. Is there a better way to do this? Ideally, I could >>>>>>> implement >>>>>>> a tiered system for checking matches where I look for an exact match, >>>>>>> look >>>>>>> for a matched parent or child term, and then as a last resort look for >>>>>>> matched words (because the of the breast cancer example). >>>>>>> >>>>>>> Any and all advice is much appreciated. Thank you! >>>>>>> >>>>>>> On Tue, Aug 22, 2017 at 5:49 AM, duluth...@gmail.com >>>>>>> [umls-similarity] <umls-similarity@yahoogroups.com> wrote: >>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> Hi Jen, >>>>>>>> >>>>>>>> Here are some ideas about using some of the commands in the >>>>>>>> installed version of UMLS::Similarity to find nearby branches of a >>>>>>>> given >>>>>>>> term of CUI. A lot more information about the different commands >>>>>>>> available >>>>>>>> can be found at : >>>>>>>> >>>>>>>> http://search.cpan.org/dist/UMLS-Interface/ >>>>>>>> >>>>>>>> I'm not certain how useful this all will be, but wanted to let you >>>>>>>> know what I was thinking at least. Please feel free to follow up as >>>>>>>> needed. >>>>>>>> >>>>>>>> >>>>>>>> tpederse@maraca:~$ getAssociatedCuis.pl "Diabetes Mellitus" >>>>>>>> >>>>>>>> >>>>>>>> UMLS-Interface Configuration Information: >>>>>>>> (Default Information - no config file) >>>>>>>> >>>>>>>> Sources (SAB): >>>>>>>> MSH >>>>>>>> Relations (REL): >>>>>>>> PAR >>>>>>>> CHD >>>>>>>> >>>>>>>> Sources (SABDEF): >>>>>>>> UMLS_ALL >>>>>>>> Relations (RELDEF): >>>>>>>> UMLS_ALL >>>>>>>> >>>>>>>> >>>>>>>> The CUIs associated with Diabetes Mellitus are: >>>>>>>> 1. C0011849 >>>>>>>> >>>>>>>> tpederse@maraca:~$ getChildren.pl C0011849 >>>>>>>> >>>>>>>> >>>>>>>> UMLS-Interface Configuration Information: >>>>>>>> (Default Information - no config file) >>>>>>>> >>>>>>>> Sources (SAB): >>>>>>>> MSH >>>>>>>> Relations (REL): >>>>>>>> PAR >>>>>>>> CHD >>>>>>>> >>>>>>>> Sources (SABDEF): >>>>>>>> UMLS_ALL >>>>>>>> Relations (RELDEF): >>>>>>>> UMLS_ALL >>>>>>>> >>>>>>>> >>>>>>>> The children of Diabetes mellitus NOS (C0011849) are: >>>>>>>> leprechaunism (C0265344) >>>>>>>> experimental diabetes mellitus (C0011853) >>>>>>>> compl diabetes mellitus (C0342257) >>>>>>>> diabetes mellitus, sudden-onset (C0011854) >>>>>>>> pregnancy-induced diabetes (C0085207) >>>>>>>> states, prediabetic (C0362046) >>>>>>>> noninsulin-dependent diabetes mellitus (C0011860) >>>>>>>> acidoses, diabetic (C0011880) >>>>>>>> >>>>>>>> tpederse@maraca:~$ getParents.pl C0011849 >>>>>>>> >>>>>>>> >>>>>>>> UMLS-Interface Configuration Information: >>>>>>>> (Default Information - no config file) >>>>>>>> >>>>>>>> Sources (SAB): >>>>>>>> MSH >>>>>>>> Relations (REL): >>>>>>>> PAR >>>>>>>> CHD >>>>>>>> >>>>>>>> Sources (SABDEF): >>>>>>>> UMLS_ALL >>>>>>>> Relations (RELDEF): >>>>>>>> UMLS_ALL >>>>>>>> >>>>>>>> >>>>>>>> The parents of Diabetes mellitus NOS (C0011849) are: >>>>>>>> endocrine system diseases(C0014130) >>>>>>>> metabolism disorder, glucose(C1257958) >>>>>>>> >>>>>>>> tpederse@maraca:~$ getAssociatedCuis.pl >>>>>>>> No term was specified on the command line >>>>>>>> Usage: getAssociatedCuis.pl [OPTIONS] TERM >>>>>>>> Type getAssociatedCuis.pl --help for help. >>>>>>>> tpederse@maraca:~$ getAssociatedCuis.pl "Diabetes Mellitus" >>>>>>>> >>>>>>>> >>>>>>>> UMLS-Interface Configuration Information: >>>>>>>> (Default Information - no config file) >>>>>>>> >>>>>>>> Sources (SAB): >>>>>>>> MSH >>>>>>>> Relations (REL): >>>>>>>> PAR >>>>>>>> CHD >>>>>>>> >>>>>>>> Sources (SABDEF): >>>>>>>> UMLS_ALL >>>>>>>> Relations (RELDEF): >>>>>>>> UMLS_ALL >>>>>>>> >>>>>>>> >>>>>>>> The CUIs associated with Diabetes Mellitus are: >>>>>>>> 1. C0011849 >>>>>>>> tpederse@maraca:~$ getChildren.pl C0011849 >>>>>>>> >>>>>>>> >>>>>>>> UMLS-Interface Configuration Information: >>>>>>>> (Default Information - no config file) >>>>>>>> >>>>>>>> Sources (SAB): >>>>>>>> MSH >>>>>>>> Relations (REL): >>>>>>>> PAR >>>>>>>> CHD >>>>>>>> >>>>>>>> Sources (SABDEF): >>>>>>>> UMLS_ALL >>>>>>>> Relations (RELDEF): >>>>>>>> UMLS_ALL >>>>>>>> >>>>>>>> >>>>>>>> The children of Diabetes mellitus NOS (C0011849) are: >>>>>>>> leprechaunism (C0265344) >>>>>>>> experimental diabetes mellitus (C0011853) >>>>>>>> compl diabetes mellitus (C0342257) >>>>>>>> diabetes mellitus, sudden-onset (C0011854) >>>>>>>> pregnancy-induced diabetes (C0085207) >>>>>>>> states, prediabetic (C0362046) >>>>>>>> noninsulin-dependent diabetes mellitus (C0011860) >>>>>>>> acidoses, diabetic (C0011880) >>>>>>>> tpederse@maraca:~$ getParents.pl C0011849 >>>>>>>> >>>>>>>> >>>>>>>> UMLS-Interface Configuration Information: >>>>>>>> (Default Information - no config file) >>>>>>>> >>>>>>>> Sources (SAB): >>>>>>>> MSH >>>>>>>> Relations (REL): >>>>>>>> PAR >>>>>>>> CHD >>>>>>>> >>>>>>>> Sources (SABDEF): >>>>>>>> UMLS_ALL >>>>>>>> Relations (RELDEF): >>>>>>>> UMLS_ALL >>>>>>>> >>>>>>>> >>>>>>>> The parents of Diabetes mellitus NOS (C0011849) are: >>>>>>>> endocrine system diseases(C0014130) >>>>>>>> metabolism disorder, glucose(C1257958) >>>>>>>> >>>>>>>> tpederse@maraca:~$ getRelated.pl C0011849 RB >>>>>>>> >>>>>>>> >>>>>>>> UMLS-Interface Configuration Information: >>>>>>>> (Default Information - no config file) >>>>>>>> >>>>>>>> Sources (SAB): >>>>>>>> MSH >>>>>>>> Relations (REL): >>>>>>>> PAR >>>>>>>> CHD >>>>>>>> >>>>>>>> Sources (SABDEF): >>>>>>>> UMLS_ALL >>>>>>>> Relations (RELDEF): >>>>>>>> UMLS_ALL >>>>>>>> >>>>>>>> >>>>>>>> No CUIs are associated with diabetes mellitus (C0011849) given the >>>>>>>> relation (RB). >>>>>>>> >>>>>>>> >>>>>>>> tpederse@maraca:~$ getRelated.pl C0011849 RN >>>>>>>> >>>>>>>> >>>>>>>> UMLS-Interface Configuration Information: >>>>>>>> (Default Information - no config file) >>>>>>>> >>>>>>>> Sources (SAB): >>>>>>>> MSH >>>>>>>> Relations (REL): >>>>>>>> PAR >>>>>>>> CHD >>>>>>>> >>>>>>>> Sources (SABDEF): >>>>>>>> UMLS_ALL >>>>>>>> Relations (RELDEF): >>>>>>>> UMLS_ALL >>>>>>>> >>>>>>>> >>>>>>>> The related (RN) CUIs to diabetes mellitus (C0011849): >>>>>>>> premature aging, okamoto type (C2930860) >>>>>>>> lipoatrophy with diabetes, hepatic steatosis, cardiomyopathy, and >>>>>>>> leukomelanodermic papules (C2931057) >>>>>>>> feigenbaum bergeron richardson syndrome (C2931125) >>>>>>>> thiamine responsive megaloblastic anemia syndrome (C0342287) >>>>>>>> yorifuji okuno syndrome (C2931296) >>>>>>>> extrapyramidal disorder, progressive, with primary hypogonadism, >>>>>>>> mental retardation, and alopecia (C0342286) >>>>>>>> pancreatic beta cell agenesis with neonatal diabetes mellitus >>>>>>>> (C1838655) >>>>>>>> photomyoclonus, diabetes mellitus, deafness, nephropathy, and >>>>>>>> cerebral dysfunction (C1809475) >>>>>>>> furukawa takagi nakao syndrome (C2931765) >>>>>>>> diabetes mellitus, neonatal, with congenital hypothyroidism >>>>>>>> (C1857775) >>>>>>>> diabetes mellitus, transient neonatal, 2 (C1835887) >>>>>>>> developmental delay, epilepsy, and neonatal diabetes (C1853564) >>>>>>>> mitochondrial myopathy with diabetes (C1839028) >>>>>>>> diabetes mellitus, transient neonatal, 3 (C1864623) >>>>>>>> diabetes mellitus, insulin-resistant, with acanthosis nigricans >>>>>>>> (C0342278) >>>>>>>> maturity-onset diabetes of the young, type 7 (C1864839) >>>>>>>> mitchell-riley syndrome (C2748662) >>>>>>>> hyperproinsulinemia (C0342283) >>>>>>>> muscular atrophy, ataxia, retinitis pigmentosa, and diabetes >>>>>>>> mellitus (C0342281) >>>>>>>> 6q24-related transient neonatal diabetes mellitus (C3711391) >>>>>>>> diabetes mellitus, congenital autoimmune (C1857958) >>>>>>>> pancreatic and cerebellar agenesis (C1836780) >>>>>>>> stimmler syndrome (C1859965) >>>>>>>> atherosclerosis, premature, with deafness, nephropathy, diabetes >>>>>>>> mellitus, photomyoclonus, and degenerative neurologic disease >>>>>>>> (C1859596) >>>>>>>> diabetes insipidus and mellitus with optic atrophy and deafness, >>>>>>>> mitochondrial form (C1838782) >>>>>>>> diabetes mellitus, transient neonatal, 1 (C1832386) >>>>>>>> pancreatic hypoplasia, congenital, with diabetes mellitus and >>>>>>>> congenital heart disease (C1838780) >>>>>>>> lymphedema-distichiasis syndrome with renal disease and diabetes >>>>>>>> mellitus (C2675066) >>>>>>>> diabetes mellitus, permanent neonatal, with neurologic features >>>>>>>> (C1833102) >>>>>>>> diabetes mellitus, permanent, of infancy (C1833104) >>>>>>>> martinez frias syndrome (C1832443) >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> UMLS-Interface Configuration Information: >>>>>>>> (Default Information - no config file) >>>>>>>> >>>>>>>> Sources (SAB): >>>>>>>> MSH >>>>>>>> Relations (REL): >>>>>>>> PAR >>>>>>>> CHD >>>>>>>> >>>>>>>> Sources (SABDEF): >>>>>>>> UMLS_ALL >>>>>>>> Relations (RELDEF): >>>>>>>> UMLS_ALL >>>>>>>> >>>>>>>> >>>>>>>> The CUIs associated with Diabetes Mellitus are: >>>>>>>> 1. C0011849 >>>>>>>> >>>>>>>> tpederse@maraca:~$ getChildren.pl C0011849 >>>>>>>> >>>>>>>> >>>>>>>> UMLS-Interface Configuration Information: >>>>>>>> (Default Information - no config file) >>>>>>>> >>>>>>>> Sources (SAB): >>>>>>>> MSH >>>>>>>> Relations (REL): >>>>>>>> PAR >>>>>>>> CHD >>>>>>>> >>>>>>>> Sources (SABDEF): >>>>>>>> UMLS_ALL >>>>>>>> Relations (RELDEF): >>>>>>>> UMLS_ALL >>>>>>>> >>>>>>>> >>>>>>>> The children of Diabetes mellitus NOS (C0011849) are: >>>>>>>> leprechaunism (C0265344) >>>>>>>> experimental diabetes mellitus (C0011853) >>>>>>>> compl diabetes mellitus (C0342257) >>>>>>>> diabetes mellitus, sudden-onset (C0011854) >>>>>>>> pregnancy-induced diabetes (C0085207) >>>>>>>> states, prediabetic (C0362046) >>>>>>>> noninsulin-dependent diabetes mellitus (C0011860) >>>>>>>> acidoses, diabetic (C0011880) >>>>>>>> >>>>>>>> tpederse@maraca:~$ getParents.pl C0011849 >>>>>>>> >>>>>>>> >>>>>>>> UMLS-Interface Configuration Information: >>>>>>>> (Default Information - no config file) >>>>>>>> >>>>>>>> Sources (SAB): >>>>>>>> MSH >>>>>>>> Relations (REL): >>>>>>>> PAR >>>>>>>> CHD >>>>>>>> >>>>>>>> Sources (SABDEF): >>>>>>>> UMLS_ALL >>>>>>>> Relations (RELDEF): >>>>>>>> UMLS_ALL >>>>>>>> >>>>>>>> >>>>>>>> The parents of Diabetes mellitus NOS (C0011849) are: >>>>>>>> endocrine system diseases(C0014130) >>>>>>>> metabolism disorder, glucose(C1257958) >>>>>>>> >>>>>>>> tpederse@maraca:~$ getAssociatedCuis.pl >>>>>>>> No term was specified on the command line >>>>>>>> Usage: getAssociatedCuis.pl [OPTIONS] TERM >>>>>>>> Type getAssociatedCuis.pl --help for help. >>>>>>>> tpederse@maraca:~$ getAssociatedCuis.pl "Diabetes Mellitus" >>>>>>>> >>>>>>>> >>>>>>>> UMLS-Interface Configuration Information: >>>>>>>> (Default Information - no config file) >>>>>>>> >>>>>>>> Sources (SAB): >>>>>>>> MSH >>>>>>>> Relations (REL): >>>>>>>> PAR >>>>>>>> CHD >>>>>>>> >>>>>>>> Sources (SABDEF): >>>>>>>> UMLS_ALL >>>>>>>> Relations (RELDEF): >>>>>>>> UMLS_ALL >>>>>>>> >>>>>>>> >>>>>>>> The CUIs associated with Diabetes Mellitus are: >>>>>>>> 1. C0011849 >>>>>>>> tpederse@maraca:~$ getChildren.pl C0011849 >>>>>>>> >>>>>>>> >>>>>>>> UMLS-Interface Configuration Information: >>>>>>>> (Default Information - no config file) >>>>>>>> >>>>>>>> Sources (SAB): >>>>>>>> MSH >>>>>>>> Relations (REL): >>>>>>>> PAR >>>>>>>> CHD >>>>>>>> >>>>>>>> Sources (SABDEF): >>>>>>>> UMLS_ALL >>>>>>>> Relations (RELDEF): >>>>>>>> UMLS_ALL >>>>>>>> >>>>>>>> >>>>>>>> The children of Diabetes mellitus NOS (C0011849) are: >>>>>>>> leprechaunism (C0265344) >>>>>>>> experimental diabetes mellitus (C0011853) >>>>>>>> compl diabetes mellitus (C0342257) >>>>>>>> diabetes mellitus, sudden-onset (C0011854) >>>>>>>> pregnancy-induced diabetes (C0085207) >>>>>>>> states, prediabetic (C0362046) >>>>>>>> noninsulin-dependent diabetes mellitus (C0011860) >>>>>>>> acidoses, diabetic (C0011880) >>>>>>>> tpederse@maraca:~$ getParents.pl C0011849 >>>>>>>> >>>>>>>> >>>>>>>> UMLS-Interface Configuration Information: >>>>>>>> (Default Information - no config file) >>>>>>>> >>>>>>>> Sources (SAB): >>>>>>>> MSH >>>>>>>> Relations (REL): >>>>>>>> PAR >>>>>>>> CHD >>>>>>>> >>>>>>>> Sources (SABDEF): >>>>>>>> UMLS_ALL >>>>>>>> Relations (RELDEF): >>>>>>>> UMLS_ALL >>>>>>>> >>>>>>>> >>>>>>>> The parents of Diabetes mellitus NOS (C0011849) are: >>>>>>>> endocrine system diseases(C0014130) >>>>>>>> metabolism disorder, glucose(C1257958) >>>>>>>> >>>>>>>> tpederse@maraca:~$ getRelated.pl C0011849 RB >>>>>>>> >>>>>>>> >>>>>>>> UMLS-Interface Configuration Information: >>>>>>>> (Default Information - no config file) >>>>>>>> >>>>>>>> Sources (SAB): >>>>>>>> MSH >>>>>>>> Relations (REL): >>>>>>>> PAR >>>>>>>> CHD >>>>>>>> >>>>>>>> Sources (SABDEF): >>>>>>>> UMLS_ALL >>>>>>>> Relations (RELDEF): >>>>>>>> UMLS_ALL >>>>>>>> >>>>>>>> >>>>>>>> No CUIs are associated with diabetes mellitus (C0011849) given the >>>>>>>> relation (RB). >>>>>>>> >>>>>>>> >>>>>>>> tpederse@maraca:~$ getRelated.pl C0011849 RN >>>>>>>> >>>>>>>> >>>>>>>> UMLS-Interface Configuration Information: >>>>>>>> (Default Information - no config file) >>>>>>>> >>>>>>>> Sources (SAB): >>>>>>>> MSH >>>>>>>> Relations (REL): >>>>>>>> PAR >>>>>>>> CHD >>>>>>>> >>>>>>>> Sources (SABDEF): >>>>>>>> UMLS_ALL >>>>>>>> Relations (RELDEF): >>>>>>>> UMLS_ALL >>>>>>>> >>>>>>>> >>>>>>>> The related (RN) CUIs to diabetes mellitus (C0011849): >>>>>>>> premature aging, okamoto type (C2930860) >>>>>>>> lipoatrophy with diabetes, hepatic steatosis, cardiomyopathy, and >>>>>>>> leukomelanodermic papules (C2931057) >>>>>>>> feigenbaum bergeron richardson syndrome (C2931125) >>>>>>>> thiamine responsive megaloblastic anemia syndrome (C0342287) >>>>>>>> yorifuji okuno syndrome (C2931296) >>>>>>>> extrapyramidal disorder, progressive, with primary hypogonadism, >>>>>>>> mental retardation, and alopecia (C0342286) >>>>>>>> pancreatic beta cell agenesis with neonatal diabetes mellitus >>>>>>>> (C1838655) >>>>>>>> photomyoclonus, diabetes mellitus, deafness, nephropathy, and >>>>>>>> cerebral dysfunction (C1809475) >>>>>>>> furukawa takagi nakao syndrome (C2931765) >>>>>>>> diabetes mellitus, neonatal, with congenital hypothyroidism >>>>>>>> (C1857775) >>>>>>>> diabetes mellitus, transient neonatal, 2 (C1835887) >>>>>>>> developmental delay, epilepsy, and neonatal diabetes (C1853564) >>>>>>>> mitochondrial myopathy with diabetes (C1839028) >>>>>>>> diabetes mellitus, transient neonatal, 3 (C1864623) >>>>>>>> diabetes mellitus, insulin-resistant, with acanthosis nigricans >>>>>>>> (C0342278) >>>>>>>> maturity-onset diabetes of the young, type 7 (C1864839) >>>>>>>> mitchell-riley syndrome (C2748662) >>>>>>>> hyperproinsulinemia (C0342283) >>>>>>>> muscular atrophy, ataxia, retinitis pigmentosa, and diabetes >>>>>>>> mellitus (C0342281) >>>>>>>> 6q24-related transient neonatal diabetes mellitus (C3711391) >>>>>>>> diabetes mellitus, congenital autoimmune (C1857958) >>>>>>>> pancreatic and cerebellar agenesis (C1836780) >>>>>>>> stimmler syndrome (C1859965) >>>>>>>> atherosclerosis, premature, with deafness, nephropathy, diabetes >>>>>>>> mellitus, photomyoclonus, and degenerative neurologic disease >>>>>>>> (C1859596) >>>>>>>> diabetes insipidus and mellitus with optic atrophy and deafness, >>>>>>>> mitochondrial form (C1838782) >>>>>>>> diabetes mellitus, transient neonatal, 1 (C1832386) >>>>>>>> pancreatic hypoplasia, congenital, with diabetes mellitus and >>>>>>>> congenital heart disease (C1838780) >>>>>>>> lymphedema-distichiasis syndrome with renal disease and diabetes >>>>>>>> mellitus (C2675066) >>>>>>>> diabetes mellitus, permanent neonatal, with neurologic features >>>>>>>> (C1833102) >>>>>>>> diabetes mellitus, permanent, of infancy (C1833104) >>>>>>>> martinez frias syndrome (C1832443) >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>> >>>>>>> >>>>>>> -- >>>>>>> Jennifer L. Wilson >>>>>>> Bioengineering, Stanford University >>>>>>> jen.wilson...@gmail.com / 703.969.3318 <(703)%20969-3318> >>>>>>> >>>>>>> >>>>>> >>>>> >>>>> >>>>> -- >>>>> Jennifer L. Wilson >>>>> Bioengineering, Stanford University >>>>> jen.wilson...@gmail.com / 703.969.3318 <(703)%20969-3318> >>>>> >>>>> >>>> >>> >> >> >> -- >> Jennifer L. Wilson >> Bioengineering, Stanford University >> jen.wilson...@gmail.com / 703.969.3318 <(703)%20969-3318> >> >> > > -- Jennifer L. Wilson Bioengineering, Stanford University jen.wilson...@gmail.com / 703.969.3318
