did you do this part (see below). If so, you should see the file sct-umls.gz in resources/org/apache/ctakes/ytex/conceptGraph/
3) Unzip YTEX Resources (Optional - UTS login required) Download and unzip ctakes-ytex-resources-3.1.2-SNAPSHOT.zip <http://www.ytex-nlp.org/umls.download/secure/3.1/ctakes-ytex-resources-3.1.2-SNAPSHOT.zip> 'over' your installation. This contains: - Concept Graphs derived from the UMLS2013AA used to compute semantic similarity measures - Dictionary Lookup table derived from UMLS2013AA for named entity recognition. On Wed, Nov 5, 2014 at 6:01 PM, Natalia Connolly < [email protected]> wrote: > Hi All, > > I'm trying out ytex within cTAKES 3.2. I followed all the > instructions listed here : > https://cwiki.apache.org/confluence/display/CTAKES/YTEX+Installation, and > I verified that the setup was fine (from setup.out). > > My ytex.properties file contains the line: > > ytex.conceptGraphName=sct-umls > > and I do have sct-umls.xml in my > ${CTAKES_HOME}/resources/org/apache/ctakes/ytex/conceptGraph. > > Despite all this I can't seem to get conceptGraph working. The error > message is the following: > > 05 Nov 2014 11:56:31 INFO ConceptSimilarityServiceImpl - begin > initialization for concept graph: sct-umls > 05 Nov 2014 11:56:31 INFO ConceptDaoImpl - could not load conceptGraph > from classpath, attempt to load from: > /usr/local/apache-ctakes-3.2.0/resources/org/apache/ctakes/ytex/conceptGraph/sct-umls > .gz > 05 Nov 2014 11:56:31 INFO ConceptDaoImpl - > /usr/local/apache-ctakes-3.2.0/resources/org/apache/ctakes/ytex/conceptGraph/sct-umls > .gz not found, cannot load concept graph > > I don't understand what needs to go into CLASSPATH to indicate where > conceptGraph is, as it already contains ${CTAKES_HOME}/resources. My class > path is set according to the documentation to: > > ${CTAKES_HOME}/desc:/${CTAKES_HOME}/resources:${CTAKES_HOME}/lib/* > > Any help would be appreciated. > > Natalia > > > >
