can you send the full stack trace of the error? Please pipe the output and stderr to a file
On Wed, Nov 5, 2014 at 8:03 PM, Natalia Connolly < [email protected]> wrote: > Yes, I did the step and I do see that file in > resources/org/apache/ctakes/ytex/conceptGraph. > > On Wed, Nov 5, 2014 at 1:59 PM, vijay garla <[email protected]> wrote: > >> did you do this part (see below). If so, you should see the file >> sct-umls.gz in resources/org/apache/ctakes/ytex/conceptGraph/ >> >> >> 3) Unzip YTEX Resources (Optional - UTS login required) >> >> Download and unzip ctakes-ytex-resources-3.1.2-SNAPSHOT.zip >> <http://www.ytex-nlp.org/umls.download/secure/3.1/ctakes-ytex-resources-3.1.2-SNAPSHOT.zip> >> 'over' >> your installation. This contains: >> >> - Concept Graphs derived from the UMLS2013AA used to compute semantic >> similarity measures >> - Dictionary Lookup table derived from UMLS2013AA for named entity >> recognition. >> >> >> On Wed, Nov 5, 2014 at 6:01 PM, Natalia Connolly < >> [email protected]> wrote: >> >>> Hi All, >>> >>> I'm trying out ytex within cTAKES 3.2. I followed all the >>> instructions listed here : >>> https://cwiki.apache.org/confluence/display/CTAKES/YTEX+Installation, >>> and I verified that the setup was fine (from setup.out). >>> >>> My ytex.properties file contains the line: >>> >>> ytex.conceptGraphName=sct-umls >>> >>> and I do have sct-umls.xml in my >>> ${CTAKES_HOME}/resources/org/apache/ctakes/ytex/conceptGraph. >>> >>> Despite all this I can't seem to get conceptGraph working. The error >>> message is the following: >>> >>> 05 Nov 2014 11:56:31 INFO ConceptSimilarityServiceImpl - begin >>> initialization for concept graph: sct-umls >>> 05 Nov 2014 11:56:31 INFO ConceptDaoImpl - could not load conceptGraph >>> from classpath, attempt to load from: >>> /usr/local/apache-ctakes-3.2.0/resources/org/apache/ctakes/ytex/conceptGraph/sct-umls >>> .gz >>> 05 Nov 2014 11:56:31 INFO ConceptDaoImpl - >>> /usr/local/apache-ctakes-3.2.0/resources/org/apache/ctakes/ytex/conceptGraph/sct-umls >>> .gz not found, cannot load concept graph >>> >>> I don't understand what needs to go into CLASSPATH to indicate where >>> conceptGraph is, as it already contains ${CTAKES_HOME}/resources. My class >>> path is set according to the documentation to: >>> >>> ${CTAKES_HOME}/desc:/${CTAKES_HOME}/resources:${CTAKES_HOME}/lib/* >>> >>> Any help would be appreciated. >>> >>> Natalia >>> >>> >>> >>> >> >
