Hello again, For the same purpose as the first email: I have put a lot of efforts in order to run this few pipelines with different versions ctakes/resources and different computer systems, and did not succeed. Most errors are "URIs" or "File (xml) not found".
I am so eager to move forward. Could anyone help me through the steps for "Smoking Status", and then "Side effects"/"Drug Annotations"? I would need the information of specific ctakes binary version and correct match resources, and relevant necessary steps. Great appreciation!!! Justin On Tue, Jul 14, 2015 at 4:04 PM, Justin Zhang <[email protected]> wrote: > Hello Everyone, > > I am looking to load following AE (analysis engine) from runctakesCVD.sh > > > - > > > <cTAKES_HOME>/desc/ctakes-smoking-status/desc/analysis_engine/SimulatedProdSmokingTAE.xml > (The annotator to obtain document or patient-level smoking status) > - > > > <cTAKES_HOME>/desc/ctakes-side-effect/desc/analysis_engine/SideEffectAggregateTAE_UMLS.xml > (The annotator to find side effect mentions and sentences from clinical > documents) > - > > > <cTAKES_HOME>/desc/ctakes-drug-ner/desc/analysis_engine/DrugAggregatePlaintextUMLSProcesor.xml > (The annotator to obtain drug annotations) > > > > What corresponding ctakes binary and ctakes resource should I use? > > In download page, current resource versions are 3.0.1, 3.10, 3.13, 3.2.0, > 3.2.1.1 > > current ctakes versions are 3.1.0, 3.1.1, 3.2.0, 3.2.1, 3.2.2 > > thanks, > > -- > Justin > -- Justin
