Did you run from source code? Any successful experience with binary ctakes?
On Wed, Jul 15, 2015 at 9:27 AM, Akhilesh Patel < [email protected]> wrote: > You can download it from their svn repository. Please use following url to > get latest version > > http://ctakes.apache.org/downloads.cgi > > Sent from Samsung Mobile > > > -------- Original message -------- > From: Justin Zhang > Date:15/07/2015 7:45 PM (GMT+05:30) > To: [email protected] > Subject: Re: corresponding versions ctakes and stakes-resource > > Hello Akhilesh, > > Thank you for quick response. > > What is the link to download 3.2.2-SNAPSHOT? and What version of ctakes > resource did you use? > > > Is it different from > https://www.apache.org/dist/ctakes/ctakes-3.2.2/apache-ctakes-3.2.2-bin.tar.gz > ? > > I tried this one and with ctakes resource 3.2.1.1. It did not for these 3 > pipelines. > > Justin > > > On Wed, Jul 15, 2015 at 9:03 AM, Akhilesh Patel < > [email protected]> wrote: > >> Hi Justin, >> >> >> >> I have not worked on smoking status however I am able to capture “Side >> effects” and “Drug annotation” information from clinical notes. Both the >> module working form me. >> >> I am using following xml files to extract the information >> >> >> >> <delegateAnalysisEngine key=*"DrugMentionAnnotator"*> >> >> <import location= >> *"../../ctakes/ctakes-drug-ner/desc/analysis_engine/DrugMentionAnnotator.xml"* >> /> >> >> </delegateAnalysisEngine> >> >> >> >> <delegateAnalysisEngine key=*"SideEffect"*> >> >> <import location= >> *"../../ctakes/ctakes-side-effect/desc/analysis_engine/SideEffectAggregateTAE.xml"* >> /> >> >> </delegateAnalysisEngine> >> >> >> >> Ctakes version I am using is 3.2.2-SNAPSHOT. >> >> >> >> Thanks, >> >> Akhilesh >> >> >> >> *From:* Justin Zhang [mailto:[email protected]] >> *Sent:* Wednesday, July 15, 2015 7:22 PM >> *To:* [email protected] >> *Subject:* Re: corresponding versions ctakes and stakes-resource >> >> >> >> Hello again, >> >> For the same purpose as the first email: I have put a lot of efforts in >> order to run this few pipelines with different versions ctakes/resources >> and different computer systems, and did not succeed. Most errors are "URIs" >> or "File (xml) not found". >> >> I am so eager to move forward. Could anyone help me through the steps for >> "Smoking Status", and then "Side effects"/"Drug Annotations"? I would need >> the information of specific ctakes binary version and correct match >> resources, and relevant necessary steps. >> >> Great appreciation!!! >> >> Justin >> >> >> >> On Tue, Jul 14, 2015 at 4:04 PM, Justin Zhang <[email protected]> >> wrote: >> >> Hello Everyone, >> >> >> >> I am looking to load following AE (analysis engine) from runctakesCVD.sh >> >> >> >> · >> <cTAKES_HOME>/desc/ctakes-smoking-status/desc/analysis_engine/SimulatedProdSmokingTAE.xml >> (The annotator to obtain document or patient-level smoking status) >> >> · >> <cTAKES_HOME>/desc/ctakes-side-effect/desc/analysis_engine/SideEffectAggregateTAE_UMLS.xml >> (The annotator to find side effect mentions and sentences from clinical >> documents) >> >> · >> <cTAKES_HOME>/desc/ctakes-drug-ner/desc/analysis_engine/DrugAggregatePlaintextUMLSProcesor.xml >> (The annotator to obtain drug annotations) >> >> >> >> What corresponding ctakes binary and ctakes resource should I use? >> >> >> >> In download page, current resource versions are 3.0.1, 3.10, 3.13, 3.2.0, >> 3.2.1.1 >> >> >> >> current ctakes versions are 3.1.0, 3.1.1, 3.2.0, 3.2.1, 3.2.2 >> >> >> >> thanks, >> >> >> >> -- >> >> Justin >> >> >> >> >> -- >> >> Justin >> =========================================================================================================================================================================================== >> DISCLAIMER: The information contained in this message (including any >> attachments) is confidential and may be privileged. If you have received it >> by mistake please notify the sender by return e-mail and permanently delete >> this message and any attachments from your system. Any dissemination, use, >> review, distribution, printing or copying of this message in whole or in >> part is strictly prohibited. Please note that e-mails are susceptible to >> change. CitiusTech shall not be liable for the improper or incomplete >> transmission of the information contained in this communication nor for any >> delay in its receipt or damage to your system. CitiusTech does not >> guarantee that the integrity of this communication has been maintained or >> that this communication is free of viruses, interceptions or interferences. >> ==================================================================================================================================================================== >> >> > > > > -- > Justin > > =========================================================================================================================================================================================== > DISCLAIMER: The information contained in this message (including any > attachments) is confidential and may be privileged. If you have received it > by mistake please notify the sender by return e-mail and permanently delete > this message and any attachments from your system. Any dissemination, use, > review, distribution, printing or copying of this message in whole or in > part is strictly prohibited. Please note that e-mails are susceptible to > change. CitiusTech shall not be liable for the improper or incomplete > transmission of the information contained in this communication nor for any > delay in its receipt or damage to your system. CitiusTech does not > guarantee that the integrity of this communication has been maintained or > that this communication is free of viruses, interceptions or interferences. > ==================================================================================================================================================================== > > -- Justin
