Which Eclipse package did you use? Mars Packages <https://eclipse.org/downloads/packages/release/Mars/R> Luna Packages <https://eclipse.org/downloads/packages/release/Luna/SR2> Kepler Packages <https://eclipse.org/downloads/packages/release/Kepler/SR2> Juno Packages <https://eclipse.org/downloads/packages/release/Juno/SR2> Indigo Packages <https://eclipse.org/downloads/packages/release/Indigo/SR2> Helios Packages <https://eclipse.org/downloads/packages/release/Helios/SR2> Galileo Packages <https://eclipse.org/downloads/packages/release/Galileo/SR2> Ganymede Packages <https://eclipse.org/downloads/packages/release/Ganymede/SR2> Europa Packages <https://eclipse.org/downloads/packages/release/Europa/WINTER> All Releases <https://eclipse.org/downloads/packages/all>
On Wed, Jul 15, 2015 at 9:36 AM, Akhilesh Patel < [email protected]> wrote: > Yes I ran using source code as well as using cvd provided by them > > > Sent from Samsung Mobile > > > -------- Original message -------- > From: Justin Zhang > Date:15/07/2015 8:02 PM (GMT+05:30) > To: [email protected] > Subject: Re: corresponding versions ctakes and stakes-resource > > Did you run from source code? > Any successful experience with binary ctakes? > > > On Wed, Jul 15, 2015 at 9:27 AM, Akhilesh Patel < > [email protected]> wrote: > >> You can download it from their svn repository. Please use following url >> to get latest version >> >> http://ctakes.apache.org/downloads.cgi >> >> Sent from Samsung Mobile >> >> >> -------- Original message -------- >> From: Justin Zhang >> Date:15/07/2015 7:45 PM (GMT+05:30) >> To: [email protected] >> Subject: Re: corresponding versions ctakes and stakes-resource >> >> Hello Akhilesh, >> >> Thank you for quick response. >> >> What is the link to download 3.2.2-SNAPSHOT? and What version of ctakes >> resource did you use? >> >> >> Is it different from >> https://www.apache.org/dist/ctakes/ctakes-3.2.2/apache-ctakes-3.2.2-bin.tar.gz >> ? >> >> I tried this one and with ctakes resource 3.2.1.1. It did not for these 3 >> pipelines. >> >> Justin >> >> >> On Wed, Jul 15, 2015 at 9:03 AM, Akhilesh Patel < >> [email protected]> wrote: >> >>> Hi Justin, >>> >>> >>> >>> I have not worked on smoking status however I am able to capture “Side >>> effects” and “Drug annotation” information from clinical notes. Both the >>> module working form me. >>> >>> I am using following xml files to extract the information >>> >>> >>> >>> <delegateAnalysisEngine key=*"DrugMentionAnnotator"*> >>> >>> <import location= >>> *"../../ctakes/ctakes-drug-ner/desc/analysis_engine/DrugMentionAnnotator.xml"* >>> /> >>> >>> </delegateAnalysisEngine> >>> >>> >>> >>> <delegateAnalysisEngine key=*"SideEffect"*> >>> >>> <import location= >>> *"../../ctakes/ctakes-side-effect/desc/analysis_engine/SideEffectAggregateTAE.xml"* >>> /> >>> >>> </delegateAnalysisEngine> >>> >>> >>> >>> Ctakes version I am using is 3.2.2-SNAPSHOT. >>> >>> >>> >>> Thanks, >>> >>> Akhilesh >>> >>> >>> >>> *From:* Justin Zhang [mailto:[email protected]] >>> *Sent:* Wednesday, July 15, 2015 7:22 PM >>> *To:* [email protected] >>> *Subject:* Re: corresponding versions ctakes and stakes-resource >>> >>> >>> >>> Hello again, >>> >>> For the same purpose as the first email: I have put a lot of efforts in >>> order to run this few pipelines with different versions ctakes/resources >>> and different computer systems, and did not succeed. Most errors are "URIs" >>> or "File (xml) not found". >>> >>> I am so eager to move forward. Could anyone help me through the steps >>> for "Smoking Status", and then "Side effects"/"Drug Annotations"? I would >>> need the information of specific ctakes binary version and correct match >>> resources, and relevant necessary steps. >>> >>> Great appreciation!!! >>> >>> Justin >>> >>> >>> >>> On Tue, Jul 14, 2015 at 4:04 PM, Justin Zhang <[email protected]> >>> wrote: >>> >>> Hello Everyone, >>> >>> >>> >>> I am looking to load following AE (analysis engine) from runctakesCVD.sh >>> >>> >>> >>> · >>> <cTAKES_HOME>/desc/ctakes-smoking-status/desc/analysis_engine/SimulatedProdSmokingTAE.xml >>> (The annotator to obtain document or patient-level smoking status) >>> >>> · >>> <cTAKES_HOME>/desc/ctakes-side-effect/desc/analysis_engine/SideEffectAggregateTAE_UMLS.xml >>> (The annotator to find side effect mentions and sentences from clinical >>> documents) >>> >>> · >>> <cTAKES_HOME>/desc/ctakes-drug-ner/desc/analysis_engine/DrugAggregatePlaintextUMLSProcesor.xml >>> (The annotator to obtain drug annotations) >>> >>> >>> >>> What corresponding ctakes binary and ctakes resource should I use? >>> >>> >>> >>> In download page, current resource versions are 3.0.1, 3.10, 3.13, >>> 3.2.0, 3.2.1.1 >>> >>> >>> >>> current ctakes versions are 3.1.0, 3.1.1, 3.2.0, 3.2.1, 3.2.2 >>> >>> >>> >>> thanks, >>> >>> >>> >>> -- >>> >>> Justin >>> >>> >>> >>> >>> -- >>> >>> Justin >>> =========================================================================================================================================================================================== >>> DISCLAIMER: The information contained in this message (including any >>> attachments) is confidential and may be privileged. If you have received it >>> by mistake please notify the sender by return e-mail and permanently delete >>> this message and any attachments from your system. Any dissemination, use, >>> review, distribution, printing or copying of this message in whole or in >>> part is strictly prohibited. Please note that e-mails are susceptible to >>> change. CitiusTech shall not be liable for the improper or incomplete >>> transmission of the information contained in this communication nor for any >>> delay in its receipt or damage to your system. CitiusTech does not >>> guarantee that the integrity of this communication has been maintained or >>> that this communication is free of viruses, interceptions or interferences. >>> ==================================================================================================================================================================== >>> >>> >> >> >> >> -- >> Justin >> >> =========================================================================================================================================================================================== >> DISCLAIMER: The information contained in this message (including any >> attachments) is confidential and may be privileged. If you have received it >> by mistake please notify the sender by return e-mail and permanently delete >> this message and any attachments from your system. Any dissemination, use, >> review, distribution, printing or copying of this message in whole or in >> part is strictly prohibited. Please note that e-mails are susceptible to >> change. CitiusTech shall not be liable for the improper or incomplete >> transmission of the information contained in this communication nor for any >> delay in its receipt or damage to your system. CitiusTech does not >> guarantee that the integrity of this communication has been maintained or >> that this communication is free of viruses, interceptions or interferences. >> ==================================================================================================================================================================== >> >> > > > > -- > Justin > > =========================================================================================================================================================================================== > DISCLAIMER: The information contained in this message (including any > attachments) is confidential and may be privileged. If you have received it > by mistake please notify the sender by return e-mail and permanently delete > this message and any attachments from your system. Any dissemination, use, > review, distribution, printing or copying of this message in whole or in > part is strictly prohibited. Please note that e-mails are susceptible to > change. CitiusTech shall not be liable for the improper or incomplete > transmission of the information contained in this communication nor for any > delay in its receipt or damage to your system. CitiusTech does not > guarantee that the integrity of this communication has been maintained or > that this communication is free of viruses, interceptions or interferences. > ==================================================================================================================================================================== > > -- Justin
