Hi, Chathuri, Thank you for the explanation.
I cloned the git and tried to compile credential-store with 'mvn clean install -Dmaven.test.skip=true' with mvn 3.0 and java 8 but got following errors. ############################################################################################################### Downloaded: http://repo1.maven.org/maven2/org/apache/derby/derbyclient/10.11.1.1/derbyclient-10.11.1.1.jar (571 KB at 2.8 KB/sec) [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 3:53.576s [INFO] Finished at: Mon Dec 21 09:38:34 KST 2015 [INFO] Final Memory: 11M/1931M [INFO] ------------------------------------------------------------------------ [ERROR] Failed to execute goal on project airavata-credential-store: Could not resolve dependencies for project org.apache.airavata:airavata-credential-store:jar:0.16-SNAPSHOT: The following artifacts could not be resolved: org.apache.airavata:airavata-credential-store-stubs:jar:0.16-SNAPSHOT, org.apache.airavata:airavata-server-configuration:jar:0.16-SNAPSHOT, org.apache.airavata:airavata-commons:jar:0.16-SNAPSHOT: Could not find artifact org.apache.airavata:airavata-credential-store-stubs:jar:0.16-SNAPSHOT in apache.snapshots (http://repository.apache.org/snapshots) -> [Help 1] [ERROR] [ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch. [ERROR] Re-run Maven using the -X switch to enable full debug logging. [ERROR] [ERROR] For more information about the errors and possible solutions, please read the following articles: [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/DependencyResolutionException ############################################################################################################### Any suggestion? Thanks, Heejoon. On Fri, Dec 18, 2015 at 9:29 PM, Chathuri Wimalasena <[email protected]> wrote: > Hi Heejoon, > > You need to set up a valid credential store token in the credential store > (experiment-catalog database has tables related to credential store). Same > credential store token needs to be set in gateway profiles. This token is > used when airavata ssh to resource, input staging and all the remote > connections with the resource. Credential store token is the identifier for > SSH credential object which contains valid SSH keys. Refer this code > https://github.com/apache/airavata/blob/master/modules/credential-store/credential-store-service/src/test/java/org/apache/airavata/credential/store/store/impl/db/SSHCredentialTest.java. > There are API methods to generate SSH keys as well. You can use any of the > two methods. > > Thanks.. > Chathuri > > > > On Fri, Dec 18, 2015 at 12:02 AM, Heejoon Chae <[email protected]> > wrote: > >> Hi, Suresh, >> >> Thank you for the help. It correctly parses the email. >> >> Now I have another error caused by 'credential token' as below, >> >> ERROR] expId: ttt_d0a8ca90-46b3-4225-add7-c29207130fc8, processId: >> PROCESS_273f058f-a0bc-400b-9a82-5d71246c8fa8, taskId: >> TASK_fc9dd43b-f0ea-4e6c-bd92-c5daa698257b type: DATA_STAGING,:- output >> staging failed, reason: Provided credential store token is not valid. >> Please provide the correct credential store token >> [INFO] expId: ttt_d0a8ca90-46b3-4225-add7-c29207130fc8, processId: >> PROCESS_273f058f-a0bc-400b-9a82-5d71246c8fa8 :- Process status changed >> FAILED -> FAILED >> [INFO] Publishing status to rabbitmq... >> [ERROR] GFac Worker throws an exception >> org.apache.airavata.gfac.core.GFacException: Error while staging output >> data >> at >> org.apache.airavata.gfac.impl.GFacEngineImpl.outputDataStaging(GFacEngineImpl.java:478) >> at >> org.apache.airavata.gfac.impl.GFacEngineImpl.runProcessOutflow(GFacEngineImpl.java:393) >> at >> org.apache.airavata.gfac.impl.GFacWorker.runProcessOutflow(GFacWorker.java:172) >> at org.apache.airavata.gfac.impl.GFacWorker.run(GFacWorker.java:105) >> at >> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) >> at >> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) >> at java.lang.Thread.run(Thread.java:745) >> >> I actually set 'false' for storing credential in the >> 'airavata-server.properties' file as bellow >> >> start.credential.store=false >> >> but it seems still they are active. >> >> Thank you, >> Heejoon. >> >> On Fri, Dec 18, 2015 at 12:42 AM, Suresh Marru <[email protected]> wrote: >> >>> Hi Heejoon, >>> >>> You will need to configure your email within gfac-config.yaml (you will >>> find it in the bin directory). >>> >>> If you can add your email to: >>> >>> - jobManagerType: SLURM >>> commandOutputParser: >>> org.apache.airavata.gfac.impl.job.SlurmOutputParser >>> emailParser: >>> org.apache.airavata.gfac.monitor.email.parser.SLURMEmailParser >>> resourceEmailAddresses: >>> - SDSC Admin <[email protected]> # comet >>> - [email protected] # stampede >>> - [email protected] >>> >>> >>> Thanks, >>> Suresh >>> >>> > On Dec 16, 2015, at 6:33 PM, Heejoon Chae <[email protected]> >>> wrote: >>> > >>> > Hi, Suresh, >>> > >>> > I am using one month old version of PGA and Airavata server. Both were >>> recent version at that time. >>> > >>> > apache-airavata-server-0.16-SNAPSHOT >>> > >>> > Thank you, >>> > Heejoon. >>> > >>> > >>> > >>> > On Thu, Dec 17, 2015 at 8:28 AM, Suresh Marru <[email protected]> >>> wrote: >>> > Hi Heejoon, >>> > >>> > Are you using Airavata 0.15 or 0.16 for this purpose? >>> > >>> > Suresh >>> > >>> >> On Dec 16, 2015, at 5:38 PM, Heejoon Chae <[email protected]> >>> wrote: >>> >> >>> >> Hi, >>> >> >>> >> I have succeeded run job with SLURM. >>> >> >>> >> Now, the job monitoring through email causes some errors as bellow. >>> >> >>> >> It seems the Airavata server correctly log in the email account and >>> bring email list, but it could not parse it correctly. >>> >> >>> >> >>> ################################################################################# >>> >> [ERROR] [EJM]: Error parsing email message >>> =====================================> >>> >> org.apache.airavata.common.exception.AiravataException: [EJM]: >>> Couldn't identify Resource job manager type from address >>> [email protected] >>> >> at >>> org.apache.airavata.gfac.monitor.email.EmailBasedMonitor.getJobMonitorType(EmailBasedMonitor.java:160) >>> >> at >>> org.apache.airavata.gfac.monitor.email.EmailBasedMonitor.parse(EmailBasedMonitor.java:144) >>> >> at >>> org.apache.airavata.gfac.monitor.email.EmailBasedMonitor.processMessages(EmailBasedMonitor.java:239) >>> >> at >>> org.apache.airavata.gfac.monitor.email.EmailBasedMonitor.run(EmailBasedMonitor.java:208) >>> >> at java.lang.Thread.run(Thread.java:745) >>> >> [ERROR] FROM: [email protected] >>> >> [ERROR] TO: [email protected] >>> >> [ERROR] SUBJECT: SLURM Job_id=116 Name=A1514598207 Ended, Run time >>> 00:00:01, COMPLETED, ExitCode 0 >>> >> >>> ################################################################################# >>> >> >>> >> Thank you, >>> >> Heejoon. >>> > >>> > >>> >>> >> >
