Yes. I am using java 1.8 [heechae@biobrainpool airavata]$ which java /packages/jdk1.8.0_65/bin/java
Thanks, Heejoon. On Tue, Dec 22, 2015 at 9:46 AM, Chathuri Wimalasena <[email protected]> wrote: > Hi Heejoon, > > I hope you are using java 1.8. > > Thanks.. > Chathuri > > On Mon, Dec 21, 2015 at 7:08 PM, Heejoon Chae <[email protected]> > wrote: > >> Hi, Supun, >> >> Thank you for fixing that. I updated and do mvn clean install. >> I got some errors like, >> >> INFO] BUILD FAILURE >> [INFO] >> ------------------------------------------------------------------------ >> [INFO] Total time: 7.754s >> [INFO] Finished at: Tue Dec 22 09:05:21 KST 2015 >> [INFO] Final Memory: 36M/1931M >> [INFO] >> ------------------------------------------------------------------------ >> [ERROR] Failed to execute goal >> org.apache.maven.plugins:maven-compiler-plugin:3.1:compile >> (default-compile) on project airavata-data-models: Fatal error compiling: >> invalid target release: 1.8 -> [Help 1] >> [ERROR] >> [ERROR] To see the full stack trace of the errors, re-run Maven with the >> -e switch. >> [ERROR] Re-run Maven using the -X switch to enable full debug logging. >> [ERROR] >> [ERROR] For more information about the errors and possible solutions, >> please read the following articles: >> [ERROR] [Help 1] >> http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException >> [ERROR] >> [ERROR] After correcting the problems, you can resume the build with the >> command >> [ERROR] mvn <goals> -rf :airavata-data-models >> >> Thanks, >> Heejoon. >> >> On Tue, Dec 22, 2015 at 12:35 AM, Supun Nakandala < >> [email protected]> wrote: >> >>> Hi Heejoon, >>> >>> There was an issue in the pom files and I fixed it now. Can you check >>> whether your build is working now >>> >>> On Sun, Dec 20, 2015 at 7:52 PM, Heejoon Chae <[email protected]> >>> wrote: >>> >>>> I got following as well, >>>> >>>> [INFO] Scanning for projects... >>>> [ERROR] The build could not read 2 projects -> [Help 1] >>>> [ERROR] >>>> [ERROR] The project >>>> org.apache.airavata:data-manager-cpi:0.16-SNAPSHOT >>>> (/data/project/mcpg/airavata/test/airavata/modules/data-manager/data-manager-cpi/pom.xml) >>>> has 1 error >>>> [ERROR] Non-resolvable parent POM: Could not find artifact >>>> org.apache.airavata:airavata:pom:0.16-SNAPSHOT and 'parent.relativePath' >>>> points at wrong local POM @ line 5, column 13 -> [Help 2] >>>> [ERROR] >>>> [ERROR] The project >>>> org.apache.airavata:data-manager-core:0.16-SNAPSHOT >>>> (/data/project/mcpg/airavata/test/airavata/modules/data-manager/data-manager-core/pom.xml) >>>> has 1 error >>>> [ERROR] Non-resolvable parent POM: Could not find artifact >>>> org.apache.airavata:airavata:pom:0.16-SNAPSHOT and 'parent.relativePath' >>>> points at wrong local POM @ line 5, column 13 -> [Help 2] >>>> [ERROR] >>>> [ERROR] To see the full stack trace of the errors, re-run Maven with >>>> the -e switch. >>>> [ERROR] Re-run Maven using the -X switch to enable full debug logging. >>>> [ERROR] >>>> [ERROR] For more information about the errors and possible solutions, >>>> please read the following articles: >>>> [ERROR] [Help 1] >>>> http://cwiki.apache.org/confluence/display/MAVEN/ProjectBuildingException >>>> [ERROR] [Help 2] >>>> http://cwiki.apache.org/confluence/display/MAVEN/UnresolvableModelException >>>> >>>> Thanks, >>>> Heejoon. >>>> >>>> On Mon, Dec 21, 2015 at 9:48 AM, Chathuri Wimalasena < >>>> [email protected]> wrote: >>>> >>>>> Instead of building only credential store module, could you build from >>>>> airavata source root. Credential store module depends on >>>>> airavata-server-configuration >>>>> and other jars. That should resolve your issue.. >>>>> >>>>> Thanks. >>>>> Chathuri >>>>> >>>>> On Sun, Dec 20, 2015 at 7:45 PM, Heejoon Chae <[email protected]> >>>>> wrote: >>>>> >>>>>> Hi, Chathuri, >>>>>> >>>>>> Thank you for the explanation. >>>>>> >>>>>> I cloned the git and tried to compile credential-store with 'mvn >>>>>> clean install -Dmaven.test.skip=true' with mvn 3.0 and java 8 but got >>>>>> following errors. >>>>>> >>>>>> >>>>>> >>>>>> ############################################################################################################### >>>>>> Downloaded: >>>>>> http://repo1.maven.org/maven2/org/apache/derby/derbyclient/10.11.1.1/derbyclient-10.11.1.1.jar >>>>>> (571 KB at 2.8 KB/sec) >>>>>> [INFO] >>>>>> ------------------------------------------------------------------------ >>>>>> [INFO] BUILD FAILURE >>>>>> [INFO] >>>>>> ------------------------------------------------------------------------ >>>>>> [INFO] Total time: 3:53.576s >>>>>> [INFO] Finished at: Mon Dec 21 09:38:34 KST 2015 >>>>>> [INFO] Final Memory: 11M/1931M >>>>>> [INFO] >>>>>> ------------------------------------------------------------------------ >>>>>> [ERROR] Failed to execute goal on project airavata-credential-store: >>>>>> Could not resolve dependencies for project >>>>>> org.apache.airavata:airavata-credential-store:jar:0.16-SNAPSHOT: The >>>>>> following artifacts could not be resolved: >>>>>> org.apache.airavata:airavata-credential-store-stubs:jar:0.16-SNAPSHOT, >>>>>> org.apache.airavata:airavata-server-configuration:jar:0.16-SNAPSHOT, >>>>>> org.apache.airavata:airavata-commons:jar:0.16-SNAPSHOT: Could not find >>>>>> artifact >>>>>> org.apache.airavata:airavata-credential-store-stubs:jar:0.16-SNAPSHOT in >>>>>> apache.snapshots (http://repository.apache.org/snapshots) -> [Help 1] >>>>>> [ERROR] >>>>>> [ERROR] To see the full stack trace of the errors, re-run Maven with >>>>>> the -e switch. >>>>>> [ERROR] Re-run Maven using the -X switch to enable full debug logging. >>>>>> [ERROR] >>>>>> [ERROR] For more information about the errors and possible solutions, >>>>>> please read the following articles: >>>>>> [ERROR] [Help 1] >>>>>> http://cwiki.apache.org/confluence/display/MAVEN/DependencyResolutionException >>>>>> >>>>>> ############################################################################################################### >>>>>> >>>>>> Any suggestion? >>>>>> >>>>>> Thanks, >>>>>> Heejoon. >>>>>> >>>>>> On Fri, Dec 18, 2015 at 9:29 PM, Chathuri Wimalasena < >>>>>> [email protected]> wrote: >>>>>> >>>>>>> Hi Heejoon, >>>>>>> >>>>>>> You need to set up a valid credential store token in the credential >>>>>>> store (experiment-catalog database has tables related to credential >>>>>>> store). >>>>>>> Same credential store token needs to be set in gateway profiles. This >>>>>>> token >>>>>>> is used when airavata ssh to resource, input staging and all the remote >>>>>>> connections with the resource. Credential store token is the identifier >>>>>>> for >>>>>>> SSH credential object which contains valid SSH keys. Refer this code >>>>>>> https://github.com/apache/airavata/blob/master/modules/credential-store/credential-store-service/src/test/java/org/apache/airavata/credential/store/store/impl/db/SSHCredentialTest.java. >>>>>>> There are API methods to generate SSH keys as well. You can use any of >>>>>>> the >>>>>>> two methods. >>>>>>> >>>>>>> Thanks.. >>>>>>> Chathuri >>>>>>> >>>>>>> >>>>>>> >>>>>>> On Fri, Dec 18, 2015 at 12:02 AM, Heejoon Chae < >>>>>>> [email protected]> wrote: >>>>>>> >>>>>>>> Hi, Suresh, >>>>>>>> >>>>>>>> Thank you for the help. It correctly parses the email. >>>>>>>> >>>>>>>> Now I have another error caused by 'credential token' as below, >>>>>>>> >>>>>>>> ERROR] expId: ttt_d0a8ca90-46b3-4225-add7-c29207130fc8, processId: >>>>>>>> PROCESS_273f058f-a0bc-400b-9a82-5d71246c8fa8, taskId: >>>>>>>> TASK_fc9dd43b-f0ea-4e6c-bd92-c5daa698257b type: DATA_STAGING,:- output >>>>>>>> staging failed, reason: Provided credential store token is not valid. >>>>>>>> Please provide the correct credential store token >>>>>>>> [INFO] expId: ttt_d0a8ca90-46b3-4225-add7-c29207130fc8, processId: >>>>>>>> PROCESS_273f058f-a0bc-400b-9a82-5d71246c8fa8 :- Process status changed >>>>>>>> FAILED -> FAILED >>>>>>>> [INFO] Publishing status to rabbitmq... >>>>>>>> [ERROR] GFac Worker throws an exception >>>>>>>> org.apache.airavata.gfac.core.GFacException: Error while staging >>>>>>>> output data >>>>>>>> at >>>>>>>> org.apache.airavata.gfac.impl.GFacEngineImpl.outputDataStaging(GFacEngineImpl.java:478) >>>>>>>> at >>>>>>>> org.apache.airavata.gfac.impl.GFacEngineImpl.runProcessOutflow(GFacEngineImpl.java:393) >>>>>>>> at >>>>>>>> org.apache.airavata.gfac.impl.GFacWorker.runProcessOutflow(GFacWorker.java:172) >>>>>>>> at org.apache.airavata.gfac.impl.GFacWorker.run(GFacWorker.java:105) >>>>>>>> at >>>>>>>> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) >>>>>>>> at >>>>>>>> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) >>>>>>>> at java.lang.Thread.run(Thread.java:745) >>>>>>>> >>>>>>>> I actually set 'false' for storing credential in the >>>>>>>> 'airavata-server.properties' file as bellow >>>>>>>> >>>>>>>> start.credential.store=false >>>>>>>> >>>>>>>> but it seems still they are active. >>>>>>>> >>>>>>>> Thank you, >>>>>>>> Heejoon. >>>>>>>> >>>>>>>> On Fri, Dec 18, 2015 at 12:42 AM, Suresh Marru <[email protected]> >>>>>>>> wrote: >>>>>>>> >>>>>>>>> Hi Heejoon, >>>>>>>>> >>>>>>>>> You will need to configure your email within gfac-config.yaml (you >>>>>>>>> will find it in the bin directory). >>>>>>>>> >>>>>>>>> If you can add your email to: >>>>>>>>> >>>>>>>>> - jobManagerType: SLURM >>>>>>>>> commandOutputParser: >>>>>>>>> org.apache.airavata.gfac.impl.job.SlurmOutputParser >>>>>>>>> emailParser: >>>>>>>>> org.apache.airavata.gfac.monitor.email.parser.SLURMEmailParser >>>>>>>>> resourceEmailAddresses: >>>>>>>>> - SDSC Admin <[email protected]> # comet >>>>>>>>> - [email protected] # stampede >>>>>>>>> - [email protected] >>>>>>>>> >>>>>>>>> >>>>>>>>> Thanks, >>>>>>>>> Suresh >>>>>>>>> >>>>>>>>> > On Dec 16, 2015, at 6:33 PM, Heejoon Chae < >>>>>>>>> [email protected]> wrote: >>>>>>>>> > >>>>>>>>> > Hi, Suresh, >>>>>>>>> > >>>>>>>>> > I am using one month old version of PGA and Airavata server. >>>>>>>>> Both were recent version at that time. >>>>>>>>> > >>>>>>>>> > apache-airavata-server-0.16-SNAPSHOT >>>>>>>>> > >>>>>>>>> > Thank you, >>>>>>>>> > Heejoon. >>>>>>>>> > >>>>>>>>> > >>>>>>>>> > >>>>>>>>> > On Thu, Dec 17, 2015 at 8:28 AM, Suresh Marru <[email protected]> >>>>>>>>> wrote: >>>>>>>>> > Hi Heejoon, >>>>>>>>> > >>>>>>>>> > Are you using Airavata 0.15 or 0.16 for this purpose? >>>>>>>>> > >>>>>>>>> > Suresh >>>>>>>>> > >>>>>>>>> >> On Dec 16, 2015, at 5:38 PM, Heejoon Chae < >>>>>>>>> [email protected]> wrote: >>>>>>>>> >> >>>>>>>>> >> Hi, >>>>>>>>> >> >>>>>>>>> >> I have succeeded run job with SLURM. >>>>>>>>> >> >>>>>>>>> >> Now, the job monitoring through email causes some errors as >>>>>>>>> bellow. >>>>>>>>> >> >>>>>>>>> >> It seems the Airavata server correctly log in the email account >>>>>>>>> and bring email list, but it could not parse it correctly. >>>>>>>>> >> >>>>>>>>> >> >>>>>>>>> ################################################################################# >>>>>>>>> >> [ERROR] [EJM]: Error parsing email message >>>>>>>>> =====================================> >>>>>>>>> >> org.apache.airavata.common.exception.AiravataException: [EJM]: >>>>>>>>> Couldn't identify Resource job manager type from address >>>>>>>>> [email protected] >>>>>>>>> >> at >>>>>>>>> org.apache.airavata.gfac.monitor.email.EmailBasedMonitor.getJobMonitorType(EmailBasedMonitor.java:160) >>>>>>>>> >> at >>>>>>>>> org.apache.airavata.gfac.monitor.email.EmailBasedMonitor.parse(EmailBasedMonitor.java:144) >>>>>>>>> >> at >>>>>>>>> org.apache.airavata.gfac.monitor.email.EmailBasedMonitor.processMessages(EmailBasedMonitor.java:239) >>>>>>>>> >> at >>>>>>>>> org.apache.airavata.gfac.monitor.email.EmailBasedMonitor.run(EmailBasedMonitor.java:208) >>>>>>>>> >> at java.lang.Thread.run(Thread.java:745) >>>>>>>>> >> [ERROR] FROM: [email protected] >>>>>>>>> >> [ERROR] TO: [email protected] >>>>>>>>> >> [ERROR] SUBJECT: SLURM Job_id=116 Name=A1514598207 Ended, Run >>>>>>>>> time 00:00:01, COMPLETED, ExitCode 0 >>>>>>>>> >> >>>>>>>>> ################################################################################# >>>>>>>>> >> >>>>>>>>> >> Thank you, >>>>>>>>> >> Heejoon. >>>>>>>>> > >>>>>>>>> > >>>>>>>>> >>>>>>>>> >>>>>>>> >>>>>>> >>>>>> >>>>> >>>> >>> >>> >>> -- >>> Thank you >>> Supun Nakandala >>> Dept. Computer Science and Engineering >>> University of Moratuwa >>> >> >> >
