Hi, Supun, Thank you for fixing that. I updated and do mvn clean install. I got some errors like,
INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 7.754s [INFO] Finished at: Tue Dec 22 09:05:21 KST 2015 [INFO] Final Memory: 36M/1931M [INFO] ------------------------------------------------------------------------ [ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.1:compile (default-compile) on project airavata-data-models: Fatal error compiling: invalid target release: 1.8 -> [Help 1] [ERROR] [ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch. [ERROR] Re-run Maven using the -X switch to enable full debug logging. [ERROR] [ERROR] For more information about the errors and possible solutions, please read the following articles: [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException [ERROR] [ERROR] After correcting the problems, you can resume the build with the command [ERROR] mvn <goals> -rf :airavata-data-models Thanks, Heejoon. On Tue, Dec 22, 2015 at 12:35 AM, Supun Nakandala <[email protected] > wrote: > Hi Heejoon, > > There was an issue in the pom files and I fixed it now. Can you check > whether your build is working now > > On Sun, Dec 20, 2015 at 7:52 PM, Heejoon Chae <[email protected]> > wrote: > >> I got following as well, >> >> [INFO] Scanning for projects... >> [ERROR] The build could not read 2 projects -> [Help 1] >> [ERROR] >> [ERROR] The project org.apache.airavata:data-manager-cpi:0.16-SNAPSHOT >> (/data/project/mcpg/airavata/test/airavata/modules/data-manager/data-manager-cpi/pom.xml) >> has 1 error >> [ERROR] Non-resolvable parent POM: Could not find artifact >> org.apache.airavata:airavata:pom:0.16-SNAPSHOT and 'parent.relativePath' >> points at wrong local POM @ line 5, column 13 -> [Help 2] >> [ERROR] >> [ERROR] The project org.apache.airavata:data-manager-core:0.16-SNAPSHOT >> (/data/project/mcpg/airavata/test/airavata/modules/data-manager/data-manager-core/pom.xml) >> has 1 error >> [ERROR] Non-resolvable parent POM: Could not find artifact >> org.apache.airavata:airavata:pom:0.16-SNAPSHOT and 'parent.relativePath' >> points at wrong local POM @ line 5, column 13 -> [Help 2] >> [ERROR] >> [ERROR] To see the full stack trace of the errors, re-run Maven with the >> -e switch. >> [ERROR] Re-run Maven using the -X switch to enable full debug logging. >> [ERROR] >> [ERROR] For more information about the errors and possible solutions, >> please read the following articles: >> [ERROR] [Help 1] >> http://cwiki.apache.org/confluence/display/MAVEN/ProjectBuildingException >> [ERROR] [Help 2] >> http://cwiki.apache.org/confluence/display/MAVEN/UnresolvableModelException >> >> Thanks, >> Heejoon. >> >> On Mon, Dec 21, 2015 at 9:48 AM, Chathuri Wimalasena < >> [email protected]> wrote: >> >>> Instead of building only credential store module, could you build from >>> airavata source root. Credential store module depends on >>> airavata-server-configuration >>> and other jars. That should resolve your issue.. >>> >>> Thanks. >>> Chathuri >>> >>> On Sun, Dec 20, 2015 at 7:45 PM, Heejoon Chae <[email protected]> >>> wrote: >>> >>>> Hi, Chathuri, >>>> >>>> Thank you for the explanation. >>>> >>>> I cloned the git and tried to compile credential-store with 'mvn clean >>>> install -Dmaven.test.skip=true' with mvn 3.0 and java 8 but got following >>>> errors. >>>> >>>> >>>> >>>> ############################################################################################################### >>>> Downloaded: >>>> http://repo1.maven.org/maven2/org/apache/derby/derbyclient/10.11.1.1/derbyclient-10.11.1.1.jar >>>> (571 KB at 2.8 KB/sec) >>>> [INFO] >>>> ------------------------------------------------------------------------ >>>> [INFO] BUILD FAILURE >>>> [INFO] >>>> ------------------------------------------------------------------------ >>>> [INFO] Total time: 3:53.576s >>>> [INFO] Finished at: Mon Dec 21 09:38:34 KST 2015 >>>> [INFO] Final Memory: 11M/1931M >>>> [INFO] >>>> ------------------------------------------------------------------------ >>>> [ERROR] Failed to execute goal on project airavata-credential-store: >>>> Could not resolve dependencies for project >>>> org.apache.airavata:airavata-credential-store:jar:0.16-SNAPSHOT: The >>>> following artifacts could not be resolved: >>>> org.apache.airavata:airavata-credential-store-stubs:jar:0.16-SNAPSHOT, >>>> org.apache.airavata:airavata-server-configuration:jar:0.16-SNAPSHOT, >>>> org.apache.airavata:airavata-commons:jar:0.16-SNAPSHOT: Could not find >>>> artifact >>>> org.apache.airavata:airavata-credential-store-stubs:jar:0.16-SNAPSHOT in >>>> apache.snapshots (http://repository.apache.org/snapshots) -> [Help 1] >>>> [ERROR] >>>> [ERROR] To see the full stack trace of the errors, re-run Maven with >>>> the -e switch. >>>> [ERROR] Re-run Maven using the -X switch to enable full debug logging. >>>> [ERROR] >>>> [ERROR] For more information about the errors and possible solutions, >>>> please read the following articles: >>>> [ERROR] [Help 1] >>>> http://cwiki.apache.org/confluence/display/MAVEN/DependencyResolutionException >>>> >>>> ############################################################################################################### >>>> >>>> Any suggestion? >>>> >>>> Thanks, >>>> Heejoon. >>>> >>>> On Fri, Dec 18, 2015 at 9:29 PM, Chathuri Wimalasena < >>>> [email protected]> wrote: >>>> >>>>> Hi Heejoon, >>>>> >>>>> You need to set up a valid credential store token in the credential >>>>> store (experiment-catalog database has tables related to credential >>>>> store). >>>>> Same credential store token needs to be set in gateway profiles. This >>>>> token >>>>> is used when airavata ssh to resource, input staging and all the remote >>>>> connections with the resource. Credential store token is the identifier >>>>> for >>>>> SSH credential object which contains valid SSH keys. Refer this code >>>>> https://github.com/apache/airavata/blob/master/modules/credential-store/credential-store-service/src/test/java/org/apache/airavata/credential/store/store/impl/db/SSHCredentialTest.java. >>>>> There are API methods to generate SSH keys as well. You can use any of the >>>>> two methods. >>>>> >>>>> Thanks.. >>>>> Chathuri >>>>> >>>>> >>>>> >>>>> On Fri, Dec 18, 2015 at 12:02 AM, Heejoon Chae <[email protected] >>>>> > wrote: >>>>> >>>>>> Hi, Suresh, >>>>>> >>>>>> Thank you for the help. It correctly parses the email. >>>>>> >>>>>> Now I have another error caused by 'credential token' as below, >>>>>> >>>>>> ERROR] expId: ttt_d0a8ca90-46b3-4225-add7-c29207130fc8, processId: >>>>>> PROCESS_273f058f-a0bc-400b-9a82-5d71246c8fa8, taskId: >>>>>> TASK_fc9dd43b-f0ea-4e6c-bd92-c5daa698257b type: DATA_STAGING,:- output >>>>>> staging failed, reason: Provided credential store token is not valid. >>>>>> Please provide the correct credential store token >>>>>> [INFO] expId: ttt_d0a8ca90-46b3-4225-add7-c29207130fc8, processId: >>>>>> PROCESS_273f058f-a0bc-400b-9a82-5d71246c8fa8 :- Process status changed >>>>>> FAILED -> FAILED >>>>>> [INFO] Publishing status to rabbitmq... >>>>>> [ERROR] GFac Worker throws an exception >>>>>> org.apache.airavata.gfac.core.GFacException: Error while staging >>>>>> output data >>>>>> at >>>>>> org.apache.airavata.gfac.impl.GFacEngineImpl.outputDataStaging(GFacEngineImpl.java:478) >>>>>> at >>>>>> org.apache.airavata.gfac.impl.GFacEngineImpl.runProcessOutflow(GFacEngineImpl.java:393) >>>>>> at >>>>>> org.apache.airavata.gfac.impl.GFacWorker.runProcessOutflow(GFacWorker.java:172) >>>>>> at org.apache.airavata.gfac.impl.GFacWorker.run(GFacWorker.java:105) >>>>>> at >>>>>> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) >>>>>> at >>>>>> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) >>>>>> at java.lang.Thread.run(Thread.java:745) >>>>>> >>>>>> I actually set 'false' for storing credential in the >>>>>> 'airavata-server.properties' file as bellow >>>>>> >>>>>> start.credential.store=false >>>>>> >>>>>> but it seems still they are active. >>>>>> >>>>>> Thank you, >>>>>> Heejoon. >>>>>> >>>>>> On Fri, Dec 18, 2015 at 12:42 AM, Suresh Marru <[email protected]> >>>>>> wrote: >>>>>> >>>>>>> Hi Heejoon, >>>>>>> >>>>>>> You will need to configure your email within gfac-config.yaml (you >>>>>>> will find it in the bin directory). >>>>>>> >>>>>>> If you can add your email to: >>>>>>> >>>>>>> - jobManagerType: SLURM >>>>>>> commandOutputParser: >>>>>>> org.apache.airavata.gfac.impl.job.SlurmOutputParser >>>>>>> emailParser: >>>>>>> org.apache.airavata.gfac.monitor.email.parser.SLURMEmailParser >>>>>>> resourceEmailAddresses: >>>>>>> - SDSC Admin <[email protected]> # comet >>>>>>> - [email protected] # stampede >>>>>>> - [email protected] >>>>>>> >>>>>>> >>>>>>> Thanks, >>>>>>> Suresh >>>>>>> >>>>>>> > On Dec 16, 2015, at 6:33 PM, Heejoon Chae <[email protected]> >>>>>>> wrote: >>>>>>> > >>>>>>> > Hi, Suresh, >>>>>>> > >>>>>>> > I am using one month old version of PGA and Airavata server. Both >>>>>>> were recent version at that time. >>>>>>> > >>>>>>> > apache-airavata-server-0.16-SNAPSHOT >>>>>>> > >>>>>>> > Thank you, >>>>>>> > Heejoon. >>>>>>> > >>>>>>> > >>>>>>> > >>>>>>> > On Thu, Dec 17, 2015 at 8:28 AM, Suresh Marru <[email protected]> >>>>>>> wrote: >>>>>>> > Hi Heejoon, >>>>>>> > >>>>>>> > Are you using Airavata 0.15 or 0.16 for this purpose? >>>>>>> > >>>>>>> > Suresh >>>>>>> > >>>>>>> >> On Dec 16, 2015, at 5:38 PM, Heejoon Chae <[email protected]> >>>>>>> wrote: >>>>>>> >> >>>>>>> >> Hi, >>>>>>> >> >>>>>>> >> I have succeeded run job with SLURM. >>>>>>> >> >>>>>>> >> Now, the job monitoring through email causes some errors as >>>>>>> bellow. >>>>>>> >> >>>>>>> >> It seems the Airavata server correctly log in the email account >>>>>>> and bring email list, but it could not parse it correctly. >>>>>>> >> >>>>>>> >> >>>>>>> ################################################################################# >>>>>>> >> [ERROR] [EJM]: Error parsing email message >>>>>>> =====================================> >>>>>>> >> org.apache.airavata.common.exception.AiravataException: [EJM]: >>>>>>> Couldn't identify Resource job manager type from address >>>>>>> [email protected] >>>>>>> >> at >>>>>>> org.apache.airavata.gfac.monitor.email.EmailBasedMonitor.getJobMonitorType(EmailBasedMonitor.java:160) >>>>>>> >> at >>>>>>> org.apache.airavata.gfac.monitor.email.EmailBasedMonitor.parse(EmailBasedMonitor.java:144) >>>>>>> >> at >>>>>>> org.apache.airavata.gfac.monitor.email.EmailBasedMonitor.processMessages(EmailBasedMonitor.java:239) >>>>>>> >> at >>>>>>> org.apache.airavata.gfac.monitor.email.EmailBasedMonitor.run(EmailBasedMonitor.java:208) >>>>>>> >> at java.lang.Thread.run(Thread.java:745) >>>>>>> >> [ERROR] FROM: [email protected] >>>>>>> >> [ERROR] TO: [email protected] >>>>>>> >> [ERROR] SUBJECT: SLURM Job_id=116 Name=A1514598207 Ended, Run >>>>>>> time 00:00:01, COMPLETED, ExitCode 0 >>>>>>> >> >>>>>>> ################################################################################# >>>>>>> >> >>>>>>> >> Thank you, >>>>>>> >> Heejoon. >>>>>>> > >>>>>>> > >>>>>>> >>>>>>> >>>>>> >>>>> >>>> >>> >> > > > -- > Thank you > Supun Nakandala > Dept. Computer Science and Engineering > University of Moratuwa >
