Ahh, it's looking in /usr/lib64 and finding libgfortran.so.3 which is older than the one expected by gcc 4.7 (system gcc is 4.4.6). Looking at my gcc installation I don't have any shared libraries in there, just static ones.
David - if you don't mind a slight diversion, where is your libgfortran.so.3? Does your system have one in /usr/lib64 (assuming you're on a 64-bit system) or in /usr/projects/hpcsoft/moonlight/gcc/4.7.2/somewhere? I'll have a play with my setup as well. Should have spotted this myself. Thanks for your help -- Paul Hatton High Performance Computing and Visualisation Specialist IT Services, The University of Birmingham Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton [Service Manager, Birmingham Environment for Academic Research] [Also Technical Director, IBM Visual and Spatial Technology Centre] > -----Original Message----- > From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] On > Behalf Of Jeff Squyres > Sent: 06 December 2012 21:30 > To: Open MPI Users > Subject: Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc > 4.7.2 > > It looks like your gfortran compiler is broken...? > > configure:53489: checking Fortran 90 kind of MPI_INTEGER_KIND > (selected_int_kind(9)) > configure:53507: gfortran -o conftest conftestf.f90 > configure:53514: $? = 0 > configure:53554: ./conftest > ./conftest: /usr/lib64/libgfortran.so.3: version `GFORTRAN_1.4' not > found (required by ./conftest) > configure:53561: $? = 1 > > > > On Dec 6, 2012, at 1:22 PM, Paul Hatton wrote: > > > failed one attached. > > > > -- > > Paul Hatton > > High Performance Computing and Visualisation Specialist > > IT Services, The University of Birmingham > > Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton > > [Service Manager, Birmingham Environment for Academic Research] > > [Also Technical Director, IBM Visual and Spatial Technology Centre] > > > > > >> -----Original Message----- > >> From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] > On > >> Behalf Of Jeff Squyres > >> Sent: 06 December 2012 21:17 > >> To: Open MPI Users > >> Subject: Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc > >> 4.7.2 > >> > >> This does not appear to be the right config.log -- the test in > question > >> passed: > >> > >> configure:53489: checking Fortran 90 kind of MPI_INTEGER_KIND > >> (selected_int_kind(9)) > >> configure:53507: gfortran -o conftest conftestf.f90 > >> configure:53514: $? = 0 > >> > >> > >> > >> On Dec 6, 2012, at 1:11 PM, Paul Hatton wrote: > >> > >>> Thanks. zip-ed config.log attached > >>> > >>> -- > >>> Paul Hatton > >>> High Performance Computing and Visualisation Specialist > >>> IT Services, The University of Birmingham > >>> Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton > >>> [Service Manager, Birmingham Environment for Academic Research] > >>> [Also Technical Director, IBM Visual and Spatial Technology Centre] > >>> > >>> > >>>> -----Original Message----- > >>>> From: users-boun...@open-mpi.org [mailto:users-bounces@open- > mpi.org] > >> On > >>>> Behalf Of Jeff Squyres > >>>> Sent: 06 December 2012 20:54 > >>>> To: Open MPI Users > >>>> Subject: Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc > >>>> 4.7.2 > >>>> > >>>> I have not tested with gfortran 4.7.2. > >>>> > >>>> Can you send the config.log file? (please compress) > >>>> > >>>> > >>>> On Dec 6, 2012, at 12:42 PM, Paul Hatton wrote: > >>>> > >>>>> I've searched the FAQ but not come up with anything about this > ... > >>>> with OpenMPI 1.6.3 and gcc 4.7.2, when I > >>>>> > >>>>> ./configure --prefix=/gpfs/apps/openmpi/1.6.3/gcc_4.7.2-tm-ib \ > >>>>> F77=gfortran FC=gfortran CC=gcc CXX=c++ \ > >>>>> --with-tm=/gpfs/sysapps/torque/4.1.2 \ > >>>>> --with-openib \ > >>>>> 2>&1|tee ../logs/configure-`date +%y_%m_%d_%Hh%Mm`.log > >>>>> > >>>>> configure fails with > >>>>> > >>>>> checking Fortran 90 kind of MPI_INTEGER_KIND > >>>> (selected_int_kind(9))... > >>>>> configure: error: Could not determine kind of > >>>> selected_int_kind(MPI_INTEGER_KIND) > >>>>> > >>>>> Has anyone built 1.6.3 with gcc 4.7.2? It build fine with Intel > >>>> 2013.0.079 and also the system (Scientific Linux 6.3) gcc which is > >>>> 4.4.6 > >>>>> > >>>>> I've attached the output from the configure command. > >>>>> > >>>>> Thanks > >>>>> > >>>>> -- > >>>>> Paul Hatton > >>>>> High Performance Computing and Visualisation Specialist > >>>>> IT Services, The University of Birmingham > >>>>> Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton > >>>>> [Service Manager, Birmingham Environment for Academic Research] > >>>>> [Also Technical Director, IBM Visual and Spatial Technology > Centre] > >>>>> > >>>>> <configure- > >>>> > 12_12_06_19h48m.log>_______________________________________________ > >>>>> users mailing list > >>>>> us...@open-mpi.org > >>>>> http://www.open-mpi.org/mailman/listinfo.cgi/users > >>>> > >>>> > >>>> -- > >>>> Jeff Squyres > >>>> jsquy...@cisco.com > >>>> For corporate legal information go to: > >>>> http://www.cisco.com/web/about/doing_business/legal/cri/ > >>>> > >>>> > >>>> _______________________________________________ > >>>> users mailing list > >>>> us...@open-mpi.org > >>>> http://www.open-mpi.org/mailman/listinfo.cgi/users > >>> > >>> > >>> > >> > *********************************************************************** > >> ****** > >>> ** > >> ** > >>> ** WARNING: This email contains an attachment of a very suspicious > >> type. ** > >>> ** You are urged NOT to open this attachment unless you are > >> absolutely ** > >>> ** sure it is legitimate. Opening this attachment may cause > >> irreparable ** > >>> ** damage to your computer and your files. If you have any > questions > >> ** > >>> ** about the validity of this message, PLEASE SEEK HELP BEFORE > >> OPENING IT. ** > >>> ** > >> ** > >>> ** This warning was added by the IU Computer Science Dept. mail > >> scanner. ** > >>> > >> > *********************************************************************** > >> ****** > >>> > >>> > >>> <config.zip>_______________________________________________ > >>> users mailing list > >>> us...@open-mpi.org > >>> http://www.open-mpi.org/mailman/listinfo.cgi/users > >> > >> > >> -- > >> Jeff Squyres > >> jsquy...@cisco.com > >> For corporate legal information go to: > >> http://www.cisco.com/web/about/doing_business/legal/cri/ > >> > >> > >> _______________________________________________ > >> users mailing list > >> us...@open-mpi.org > >> http://www.open-mpi.org/mailman/listinfo.cgi/users > > > > > > > *********************************************************************** > ****** > > ** > ** > > ** WARNING: This email contains an attachment of a very suspicious > type. ** > > ** You are urged NOT to open this attachment unless you are > absolutely ** > > ** sure it is legitimate. Opening this attachment may cause > irreparable ** > > ** damage to your computer and your files. If you have any questions > ** > > ** about the validity of this message, PLEASE SEEK HELP BEFORE > OPENING IT. ** > > ** > ** > > ** This warning was added by the IU Computer Science Dept. mail > scanner. ** > > > *********************************************************************** > ****** > > > > > > <config.zip>_______________________________________________ > > users mailing list > > us...@open-mpi.org > > http://www.open-mpi.org/mailman/listinfo.cgi/users > > > -- > Jeff Squyres > jsquy...@cisco.com > For corporate legal information go to: > http://www.cisco.com/web/about/doing_business/legal/cri/ > > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users
