Thanks. This is obviously (now) a problem with my gcc build which isn't appropriate for this list. I'll re-visit this and post a solution once I've (hopefully) got this working. I don't have any shared libraries (*.so.*) in my gcc tree so something went badly wrong ...
Thanks for your help. -- Paul Hatton High Performance Computing and Visualisation Specialist IT Services, The University of Birmingham Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton [Service Manager, Birmingham Environment for Academic Research] [Also Technical Director, IBM Visual and Spatial Technology Centre] > -----Original Message----- > From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] On > Behalf Of Gunter, David O > Sent: 06 December 2012 22:27 > To: Open MPI Users > Subject: Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc > 4.7.2 > > My gcc 4.7.2 build appears to be ignoring the one in /usr/lib64 and > using the one in its own install tree: > /usr/projects/hpcsoft/moonlight/gcc/4.7.2/lib64/libgfortran.so.3 > > -david > > -- > David Gunter > HPC-3: Infrastructure Team > Los Alamos National Laboratory > > > > > On Dec 6, 2012, at 2:50 PM, Paul Hatton wrote: > > > Ahh, it's looking in /usr/lib64 and finding libgfortran.so.3 which is > older than the one expected by gcc 4.7 (system gcc is 4.4.6). Looking > at my gcc installation I don't have any shared libraries in there, just > static ones. > > > > David - if you don't mind a slight diversion, where is your > libgfortran.so.3? Does your system have one in /usr/lib64 (assuming > you're on a 64-bit system) or in > /usr/projects/hpcsoft/moonlight/gcc/4.7.2/somewhere? > > > > I'll have a play with my setup as well. Should have spotted this > myself. > > > > Thanks for your help > > > > -- > > Paul Hatton > > High Performance Computing and Visualisation Specialist > > IT Services, The University of Birmingham > > Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton > > [Service Manager, Birmingham Environment for Academic Research] > > [Also Technical Director, IBM Visual and Spatial Technology Centre] > > > > > >> -----Original Message----- > >> From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] > On > >> Behalf Of Jeff Squyres > >> Sent: 06 December 2012 21:30 > >> To: Open MPI Users > >> Subject: Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc > >> 4.7.2 > >> > >> It looks like your gfortran compiler is broken...? > >> > >> configure:53489: checking Fortran 90 kind of MPI_INTEGER_KIND > >> (selected_int_kind(9)) > >> configure:53507: gfortran -o conftest conftestf.f90 > >> configure:53514: $? = 0 > >> configure:53554: ./conftest > >> ./conftest: /usr/lib64/libgfortran.so.3: version `GFORTRAN_1.4' not > >> found (required by ./conftest) > >> configure:53561: $? = 1 > >> > >> > >> > >> On Dec 6, 2012, at 1:22 PM, Paul Hatton wrote: > >> > >>> failed one attached. > >>> > >>> -- > >>> Paul Hatton > >>> High Performance Computing and Visualisation Specialist > >>> IT Services, The University of Birmingham > >>> Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton > >>> [Service Manager, Birmingham Environment for Academic Research] > >>> [Also Technical Director, IBM Visual and Spatial Technology Centre] > >>> > >>> > >>>> -----Original Message----- > >>>> From: users-boun...@open-mpi.org [mailto:users-bounces@open- > mpi.org] > >> On > >>>> Behalf Of Jeff Squyres > >>>> Sent: 06 December 2012 21:17 > >>>> To: Open MPI Users > >>>> Subject: Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc > >>>> 4.7.2 > >>>> > >>>> This does not appear to be the right config.log -- the test in > >> question > >>>> passed: > >>>> > >>>> configure:53489: checking Fortran 90 kind of MPI_INTEGER_KIND > >>>> (selected_int_kind(9)) > >>>> configure:53507: gfortran -o conftest conftestf.f90 > >>>> configure:53514: $? = 0 > >>>> > >>>> > >>>> > >>>> On Dec 6, 2012, at 1:11 PM, Paul Hatton wrote: > >>>> > >>>>> Thanks. zip-ed config.log attached > >>>>> > >>>>> -- > >>>>> Paul Hatton > >>>>> High Performance Computing and Visualisation Specialist > >>>>> IT Services, The University of Birmingham > >>>>> Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton > >>>>> [Service Manager, Birmingham Environment for Academic Research] > >>>>> [Also Technical Director, IBM Visual and Spatial Technology > Centre] > >>>>> > >>>>> > >>>>>> -----Original Message----- > >>>>>> From: users-boun...@open-mpi.org [mailto:users-bounces@open- > >> mpi.org] > >>>> On > >>>>>> Behalf Of Jeff Squyres > >>>>>> Sent: 06 December 2012 20:54 > >>>>>> To: Open MPI Users > >>>>>> Subject: Re: [OMPI users] error configuring OpenMPI 1.6.3 with > gcc > >>>>>> 4.7.2 > >>>>>> > >>>>>> I have not tested with gfortran 4.7.2. > >>>>>> > >>>>>> Can you send the config.log file? (please compress) > >>>>>> > >>>>>> > >>>>>> On Dec 6, 2012, at 12:42 PM, Paul Hatton wrote: > >>>>>> > >>>>>>> I've searched the FAQ but not come up with anything about this > >> ... > >>>>>> with OpenMPI 1.6.3 and gcc 4.7.2, when I > >>>>>>> > >>>>>>> ./configure --prefix=/gpfs/apps/openmpi/1.6.3/gcc_4.7.2-tm-ib > \ > >>>>>>> F77=gfortran FC=gfortran CC=gcc CXX=c++ \ > >>>>>>> --with-tm=/gpfs/sysapps/torque/4.1.2 \ > >>>>>>> --with-openib \ > >>>>>>> 2>&1|tee ../logs/configure-`date +%y_%m_%d_%Hh%Mm`.log > >>>>>>> > >>>>>>> configure fails with > >>>>>>> > >>>>>>> checking Fortran 90 kind of MPI_INTEGER_KIND > >>>>>> (selected_int_kind(9))... > >>>>>>> configure: error: Could not determine kind of > >>>>>> selected_int_kind(MPI_INTEGER_KIND) > >>>>>>> > >>>>>>> Has anyone built 1.6.3 with gcc 4.7.2? It build fine with Intel > >>>>>> 2013.0.079 and also the system (Scientific Linux 6.3) gcc which > is > >>>>>> 4.4.6 > >>>>>>> > >>>>>>> I've attached the output from the configure command. > >>>>>>> > >>>>>>> Thanks > >>>>>>> > >>>>>>> -- > >>>>>>> Paul Hatton > >>>>>>> High Performance Computing and Visualisation Specialist > >>>>>>> IT Services, The University of Birmingham > >>>>>>> Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton > >>>>>>> [Service Manager, Birmingham Environment for Academic Research] > >>>>>>> [Also Technical Director, IBM Visual and Spatial Technology > >> Centre] > >>>>>>> > >>>>>>> <configure- > >>>>>> > >> 12_12_06_19h48m.log>_______________________________________________ > >>>>>>> users mailing list > >>>>>>> us...@open-mpi.org > >>>>>>> http://www.open-mpi.org/mailman/listinfo.cgi/users > >>>>>> > >>>>>> > >>>>>> -- > >>>>>> Jeff Squyres > >>>>>> jsquy...@cisco.com > >>>>>> For corporate legal information go to: > >>>>>> http://www.cisco.com/web/about/doing_business/legal/cri/ > >>>>>> > >>>>>> > >>>>>> _______________________________________________ > >>>>>> users mailing list > >>>>>> us...@open-mpi.org > >>>>>> http://www.open-mpi.org/mailman/listinfo.cgi/users > >>>>> > >>>>> > >>>>> > >>>> > >> > *********************************************************************** > >>>> ****** > >>>>> ** > >>>> ** > >>>>> ** WARNING: This email contains an attachment of a very > suspicious > >>>> type. ** > >>>>> ** You are urged NOT to open this attachment unless you are > >>>> absolutely ** > >>>>> ** sure it is legitimate. Opening this attachment may cause > >>>> irreparable ** > >>>>> ** damage to your computer and your files. If you have any > >> questions > >>>> ** > >>>>> ** about the validity of this message, PLEASE SEEK HELP BEFORE > >>>> OPENING IT. ** > >>>>> ** > >>>> ** > >>>>> ** This warning was added by the IU Computer Science Dept. mail > >>>> scanner. ** > >>>>> > >>>> > >> > *********************************************************************** > >>>> ****** > >>>>> > >>>>> > >>>>> <config.zip>_______________________________________________ > >>>>> users mailing list > >>>>> us...@open-mpi.org > >>>>> http://www.open-mpi.org/mailman/listinfo.cgi/users > >>>> > >>>> > >>>> -- > >>>> Jeff Squyres > >>>> jsquy...@cisco.com > >>>> For corporate legal information go to: > >>>> http://www.cisco.com/web/about/doing_business/legal/cri/ > >>>> > >>>> > >>>> _______________________________________________ > >>>> users mailing list > >>>> us...@open-mpi.org > >>>> http://www.open-mpi.org/mailman/listinfo.cgi/users > >>> > >>> > >>> > >> > *********************************************************************** > >> ****** > >>> ** > >> ** > >>> ** WARNING: This email contains an attachment of a very suspicious > >> type. ** > >>> ** You are urged NOT to open this attachment unless you are > >> absolutely ** > >>> ** sure it is legitimate. Opening this attachment may cause > >> irreparable ** > >>> ** damage to your computer and your files. If you have any > questions > >> ** > >>> ** about the validity of this message, PLEASE SEEK HELP BEFORE > >> OPENING IT. ** > >>> ** > >> ** > >>> ** This warning was added by the IU Computer Science Dept. mail > >> scanner. ** > >>> > >> > *********************************************************************** > >> ****** > >>> > >>> > >>> <config.zip>_______________________________________________ > >>> users mailing list > >>> us...@open-mpi.org > >>> http://www.open-mpi.org/mailman/listinfo.cgi/users > >> > >> > >> -- > >> Jeff Squyres > >> jsquy...@cisco.com > >> For corporate legal information go to: > >> http://www.cisco.com/web/about/doing_business/legal/cri/ > >> > >> > >> _______________________________________________ > >> users mailing list > >> us...@open-mpi.org > >> http://www.open-mpi.org/mailman/listinfo.cgi/users > > > > _______________________________________________ > > users mailing list > > us...@open-mpi.org > > http://www.open-mpi.org/mailman/listinfo.cgi/users > > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users
