Some additional comments in the text below.

But as a general comment : neither tomcat nor your application seem to log any error. This suggest that when a connection is established by the client, and it sends a request to tomcat on that conection, it does get processed without error (and apparently without an extraordinary long delay). If there was a problem at the tomcat level either reading the request, or processing it, or sending the response to the wire (from the tomcat point of view), then you would see errors in those logs.
(Such as "client broke connection" or "timeout while reading request" or 
similar).

This all suggests that the problem is indeed down either at the TCP/socket level on the tomcat server, or even at some other intermediate agent level. If the socket Tomcat is using is a java socket, then it is at the JVM level that you need to look for logging capabilities. If it is a "Tomcat native" socket, then it would be at that level (because that is native code, not java). (Otherwise said : tomcat will never be aware of, or have access to data related to, TCP packet transmission/retransmission issues; and even less your application)


On 16.07.2018 20:48, David Cleary wrote:
On 16.07.2018 16:35, David Cleary wrote:
2018-07-16 15:55 GMT+03:00 David Cleary <da...@progress.com>:
We have a customer who is experiencing a random, 21 second pause when using out
Tomcat
based application server. We believe this may be during a TCP connect and 
timeout. Logging
indicates the pause happens before the request makes it to our back end.

Logging where then ?

Sorry for any formatting issues. I have a digest subscription which doesn't 
lend well to interactivity.

Clients are running on Windows machines. Server is running on AWS and Linux. 
There is a cloud firewall in between (pfSense). Do not have the details if they 
are running the cloud version available on AWS.

Client logging shows this:

[18/05/16@12:12:48.822+1000] P-006760 T-002372 1 4GL REV            Trying 
Connection
[18/05/16@12:13:09.925+1000] P-006760 T-002372 1 4GL REV            Connect 
Complete 21102
[18/05/16@12:13:09.925+1000] P-006760 T-002372 1 4GL REV            WARNING: 
LONG CONNECTION

From the point of view of the client (low-level), the TCP connection is with the front-end firewall/load balancer. The firewall has a separate TCP connection with the back-end server, and copies packets between these two connections, changing addresses/ports as required. I do not know the client, and I guess tht it is possible that these "connection" messages relate to the logical connection with the application, rather than purely the TCP level.
But it sounds somewhat unlikely.
Do you have any way to re-configure this (for testing) in such a way that the client would bypass the firewall/load-balancer and connect directly to your application server ?
(and see if the issue happens also then)


[18/05/16@12:13:09.925+1000] P-006760 T-002372 1 4GL REV            
A4DC513EA548E24508E1E90AA9EA61DD9386DDB475AD.clintons connected 21102

Localhost access log shows this

localhost_access_log.2018-05-16.txt:10.255.11.250 - - [16/May/2018:12:13:16 +1000] 
"POST /apsv?CONNHDL=A4DC513EA548E24508E1E90AA9EA61DD9386DDB475AD.clintons HTT 
P/1.1" 200 253 1


The access log line is written when the request is in effect terminated (processed) and the result has already been sent to the wire (that is e.g. how it can log the size of the response). I think that if you look at that Access Log in the documentation, you will find tat you can log additional details, such as how much time it took to process the request e.g.
But so far, that does not seem to be relavant to the problem at hand.

And our back end agent log shows this:

clintons.agent.log:[18/05/16@12:13:16.294+1000] P-019364 T-2819262208 2 AS-19 
AS Application Server connected with connection id: 
A4DC513EA548E24508E1E90AA9EA61 DD9386DDB475AD.clintons. (8358)
clintons.agent.log:[18/05/16@12:13:16.299+1000] P-019364 T-3688318720 2 AS-19 
AS Application Server disconnected with connection id: 
A4DC513EA548E24508E1E90AA9E A61DD9386DDB475AD.clintons. (8359)


So again, no problem visible at that level.

Customer had some weird reconnection logic that was part of their application. 
After removing the code so the logical connection would be kept open, we saw 
this pause happen on a standard request. I do not know how long this logical 
connection was idle before running. I also do not know if Tomcat closed the 
underlying socket either due to resources or a keep-alive timeout. I was hoping 
logging could tell me when Tomcat binds to an incoming socket and releases it. 
I was hoping to show in the above example, as far as Tomcat is concerned, the 
21 second delay happened outside of the server. Scouring the source code and 
trying some experimentation, it does not appear there is logging available at 
the socket level.

   It mostly happens
when we create an initial logical connection, but we have also seen it 
elsewhere where
we
believe the TCP Keep alive was expired and a new socket had to be established. 
However,
I
do not know this and am hoping there is some logging I can turn on in the NIO 
connector
to
collect more data. I tried turning on logging in the Endpoint class, but that 
did not
provide
anything useful.

If the connection request does not even reach the Tomcat back-end, that is also 
unlikely
to provide much information. (Not being facetious here, just stating a fact).
Can you do a "netstat" command on your Tomcat server when this happens ?
If yes, maybe some part of the output would provide some information from the 
TCP level
(such as a high number of connections, to the Tomcat NIO port, in some specific 
TCP state

e.g.)

Customer did some probing with Wireshark and said they were seeing a TCP 
retransmission (sorry, I do not have many more details). In investigating this, 
we discovered this info on TCP timeouts:

" There's probably a million reasons why the client may never receive a 
SYN-ACK. The one I've seen more often is packet loss, which in turn can have lots of 
reasons, for example a malfunctioning or misconfigured network switch.
However, you can immediately spot if your timeout/hang problems are caused by 
TCP retransmission because they happen to cause response times that are 
unusually frequently distributed around 3, 9 and 21 seconds (and on, of course).
In fact, the TCP retransmission timeout starts at 3 seconds, but if the client tries 
to resend after a timeout and still receives no answer, it doubles the wait to 6 s, 
so the total response time will be 9 seconds, assuming that the client now finally 
receives the SYN-ACK. Otherwise, 3 + 6 + 12 = 21, then 3 + 6 + 12 + 24 = 45 s and so 
on and so forth."

This is why we are focusing on the TCP layer.

  There is a NAT firewall between the client and server, so I'm looking for
some TCP level logging that could point me in the proper direction.

Tomcat version = ?

Sorry. Tomcat 8.5.27.


And on which kind of O.S. is this happening ?

Also maybe another question : is this happening on a Tomcat server which is 
dedicated to
that particular customer ? or is the Tomcat server shared between different 
customers, and

only that particular customer experiences these delays ?

We sell an application server that customers create their own applications on. 
This particular customer has many customers themselves. The customer's 
application do not exhibit this running on our older, non-Tomcat based 
AppServer. Since this happens randomly, only a couple of times a day, it is 
difficult to diagnose. Since the customer doesn't see this issue, running the 
same exact client, on our older AppServer, they believe it is the new one. 
However, the older one isn't HTTP-based, and they had a bunch of hacks related 
to connections where they would recycle a connection after 5 minutes of 
inactivity, or after a 30 minute lifespan. This says to me the issue clearly 
isn't our appserver, but I can't prove it at this point. The firewall is my 
likely culprit, but without logging at the Tomcat endpoint, I can't 
definitively say where the pause is.



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