Dear Christoph, You are right!!!!. I have updated the cmake version from 2.8.1 to 2.8.4 and now the compilation is fine.
Thank you very much for your kind help. Cheers, Javi On 15 jul, 11:14, Christoph Junghans <[email protected]> wrote: > Hi Javier, > > I remember having a similar problem with an older version of cmake. > Which version of cmake are you using? > ($cmake --version) > > Cheers, > > Christoph > > 2011/7/15 Javier Ramos <[email protected]>: > > > Dear developers and users, > > > I am trying to build the votca package following the instructions on > > the web page. However, I have some problems which I am not able to > > solve. > > > To do that I use the following script > > > >cat compiler.sh > > > source /home/nightrain/CODES/VOTCA/VOTCA_1.2/TMP/ > > gromacs-4.5.4_b/bin/GMXRC.bash > > prefix=`pwd` > > echo $prefix > > mkdir -p ${prefix}/src > > cd ${prefix}/src > > wgethttp://votca.googlecode.com/hg/build.sh > > chmod +x build.sh > > ./build.sh --prefix ${prefix} -j 1 --log build.log tools csg > > > The tools are compiled without problem but in the case of the csg > > package, after sometime, I get the following error: > > > =================================================== > > (...) > > Scanning dependencies of target csg_property > > [ 55%] Building CXX object src/tools/CMakeFiles/csg_property.dir/ > > csg_property.cc.o > > Linking CXX executable csg_property > > [ 55%] Built target csg_property > > Scanning dependencies of target csg_property_manpage > > [ 55%] Generating csg_property.man > > [ 57%] Built target csg_property_manpage > > Scanning dependencies of target csg_call > > Current revision is 400a0374775a > > [ 57%] Built target csg_call > > Scanning dependencies of target csg_call_manpage > > make[2]: *** No rule to make target `help2t2t',needed by `scripts/ > > help2t2t'. Stop. > > make[1]: *** [scripts/CMakeFiles/csg_call_manpage.dir/all] Error 2 > > make: *** [all] Error 2 > > =================================================== > > > Please, can someone help me to address this error? > > > Thanks in advance. Best regards > > > -------------------------------------------------------------- > > Dr. Javier Ramos > > Molecular Structure and Properties of Polymers > > Department of Macromolecular Physics > > Instituto de Estructura de la Materia (CSIC) > > C/ Serrano 113 bis 28006 Madrid (Spain) > > Voice +34 91 561 68 00 (943112) > > Fax +34 91 585 54 13 > >http://www.biophym.iem.csic.es/biophym > > -------------------------------------------------------------- > > > P.D. I paste here the content of the build.log file: > > > >cat build.log > > > Log of './build.sh --prefix /home/nightrain/CODES/VOTCA/VOTCA_1.2/ > > TMP4 -j 1 tools csg' > > This is VOTCA build.sh, version 1.6.1 > > prefix is '/home/nightrain/CODES/VOTCA/VOTCA_1.2/TMP4' > > Using 1 jobs for make > > Working on tools > > Doing checkout for tools fromhttps://tools.votca.googlecode.com/hg/ > > (CTRL-C to stop) 5 4 3 2 1 > > requesting all changes > > adding changesets > > adding manifests > > adding file changes > > added 474 changesets with 2604 changes to 1678 files (+2 heads) > > updating to branch default > > 1460 files updated, 0 files merged, 0 files removed, 0 files > > unresolved > > Switching to stable branch add --dev option to prevent that > > 7 files updated, 0 files merged, 0 files removed, 0 files unresolved > > cmake -DCMAKE_INSTALL_PREFIX=/home/nightrain/CODES/VOTCA/VOTCA_1.2/ > > TMP4 . > > -- The C compiler identification is GNU > > -- The CXX compiler identification is GNU > > -- Check for working C compiler: /usr/bin/gcc > > -- Check for working C compiler: /usr/bin/gcc -- works > > -- Detecting C compiler ABI info > > -- Detecting C compiler ABI info - done > > -- Check for working CXX compiler: /usr/bin/c++ > > -- Check for working CXX compiler: /usr/bin/c++ -- works > > -- Detecting CXX compiler ABI info > > -- Detecting CXX compiler ABI info - done > > -- Looking for include files CMAKE_HAVE_PTHREAD_H > > -- Looking for include files CMAKE_HAVE_PTHREAD_H - found > > -- Looking for pthread_create in pthreads > > -- Looking for pthread_create in pthreads - not found > > -- Looking for pthread_create in pthread > > -- Looking for pthread_create in pthread - found > > -- Found Threads: TRUE > > -- Found TXT2TAGS: /usr/bin/txt2tags > > -- Looking for assert.h > > -- Looking for assert.h - found > > -- Looking for math.h > > -- Looking for math.h - found > > -- Looking for stdio.h > > -- Looking for stdio.h - found-- Looking for C++ include cmath > > -- Looking for C++ include cmath - found > > -- Looking for C++ include fstream > > -- Looking for C++ include fstream - found > > -- Looking for C++ include functional > > -- Looking for C++ include functional - found > > -- Looking for C++ include iostream > > -- Looking for C++ include iostream - found > > -- Looking for C++ include limits > > -- Looking for C++ include limits - found > > -- Looking for C++ include list > > -- Looking for C++ include list - found > > -- Looking for C++ include map > > -- Looking for C++ include map - found > > -- Looking for C++ include ostream > > -- Looking for C++ include ostream - found > > -- Looking for C++ include sstream > > -- Looking for C++ include sstream - found > > -- Looking for C++ include stack > > -- Looking for C++ include stack - found > > -- Looking for C++ include stdexcept > > -- Looking for C++ include stdexcept - found > > -- Looking for C++ include string > > -- Looking for C++ include string - found > > -- Looking for C++ include vector > > -- Looking for C++ include vector - found > > -- Looking for sqrt in m > > -- Looking for sqrt in m - found > > -- Boost version: 1.40.0 > > -- Found the following Boost libraries: > > -- program_options > > -- Found EXPAT: /usr/lib/libexpat.so > > -- checking for module 'fftw3' > > -- found fftw3, version 3.2.2 > > -- Found FFTW3: /usr/lib/libfftw3.so > > -- Looking for fftw_plan_r2r_1d in /usr/lib/libfftw3.so > > -- Looking for fftw_plan_r2r_1d in /usr/lib/libfftw3.so - found > > -- Found CBLAS: /usr/lib/libcblas.so > > -- Looking for cblas_dsyrk in /usr/lib/libcblas.so > > -- Looking for cblas_dsyrk in /usr/lib/libcblas.so - found > > -- checking for module 'gsl' > > -- found gsl, version 1.13 > > -- Found GSL: /usr/lib/libgsl.so > > -- Looking for gsl_linalg_QR_decomp in /usr/lib/libgsl.so;/usr/lib/ > > libcblas.so > > -- Looking for gsl_linalg_QR_decomp in /usr/lib/libgsl.so;/usr/lib/ > > libcblas.so - found > > -- checking for module 'sqlite3' > > -- found sqlite3, version 3.6.22 > > -- Found SQLITE3: /usr/lib/libsqlite3.so > > -- Found Doxygen: /usr/bin/doxygen > > -- Configuring done > > -- Generating done > > -- Build files have been written to: /home/nightrain/CODES/VOTCA/ > > VOTCA_1.2/TMP4/src/tools > > buidling tools > > Scanning dependencies of target changelog > > [ 0%] Building CHANGELOG using txt2tags > > [ 3%] Built target changelog > > Scanning dependencies of target hgversion > > [ 3%] Built target hgversion > > Scanning dependencies of target manpages > > [ 3%] Building votca_tools manpage > > [ 7%] Built target manpages > > Scanning dependencies of target votca_tools > > [ 11%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ > > linalg.cc.o > > [ 14%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ > > matrix.cc.o > > [ 18%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ > > histogramnew.cc.o > > [ 22%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ > > spline.cc.o > > [ 25%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ > > random.cc.o > > [ 29%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ > > mutex.cc.o > > [ 33%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ > > rangeparser.cc.o > > [ 37%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ > > crosscorrelate.cc.o > > [ 40%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ > > tokenizer.cc.o > > [ 44%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ > > akimaspline.cc.o > > [ 48%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ > > parcer.cc.o > > [ 51%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ > > parsexml.cc.o > > [ 55%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ > > correlate.cc.o > > [ 59%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ > > linspline.cc.o > > [ 62%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ > > table.cc.o > > [ 66%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ > > cubicspline.cc.o > > [ 70%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ > > histogram.cc.o > > [ 74%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ > > thread.cc.o > > [ 77%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ > > datacollection.cc.o > > [ 81%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ > > property.cc.o > > [ 85%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ > > application.cc.o > > [ 88%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ > > version.cc.o > > [ 92%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ > > database.cc.o > > [ 96%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ > > statement.cc.o > > Linking CXX shared library libvotca_tools.so > > [ 96%] Built target votca_tools > > Scanning dependencies of target linktest > > [100%] Building CXX object src/libtools/CMakeFiles/linktest.dir/ > > linktest.cc.o > > Linking CXX executable linktest > > [100%] Built target linktest > > installing tools > > [ 3%] Built target changelog > > [ 3%] Built target hgversion > > [ 7%] Built target manpages > > [ 96%] Built target votca_tools > > [100%] Built target linktest > > Install the project... > > -- Install configuration: "Release" > > -- Installing: /home/nightrain/CODES/VOTCA/VOTCA_1.2/TMP4/lib/ > > libvotca_tools.so.2 > > -- Installing: /home/nightrain/CODES/VOTCA/VOTCA_1.2/TMP4/lib/ > > libvotca_tools.so > > -- Installing: /home/nightrain/CODES/VOTCA/VOTCA_1.2/TMP4/lib/ > > pkgconfig/libvotca_tools.pc > > -- Installing: /home/nightrain/CODES/VOTCA/VOTCA_1.2/TMP4/include/ > > votca/tools/rangeparser.h > > -- Installing: /home/nightrain/CODES/VOTCA/VOTCA_1.2/TMP4/include/ > > votca/tools/spline.h > > -- Installing: /home/nightrain/CODES/VOTCA/VOTCA_1.2/TMP4/include/ > > votca/tools/random.h > > -- Installing: /home/nightrain/CODES/VOTCA/VOTCA_1.2/TMP4/include/ > > votca/tools/parsexml.h > > -- Installing: > > ... > > leer más » -- You received this message because you are subscribed to the Google Groups "votca" group. 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