Hi Sacha, this seems to be a problem if there is an old very still installed. Uninstall (remove) the old version first. If you are using build.sh add the '--clean-out' option.
I will fix that in the next release! Cheers, Christoph 2011/7/26 Sacha Mould <[email protected]>: > Hi all, > > i'm trying to install Vocta 1.2 release, i'm using CMake 2.8.5 for it. > After typing "make" an error appears while generating csg_inverse: > > ..... > > [ 64%] Built target csg_property_manpage > Linking CXX executable csg_resample > [ 66%] Built target csg_resample > [ 66%] Generating csg_resample.man > [ 67%] Built target csg_resample_manpage > Linking CXX executable csg_dump > [ 68%] Built target csg_dump > [ 68%] Generating csg_dump.man > [ 70%] Built target csg_dump_manpage > [ 70%] Built target csg_inverse > [ 70%] Generating csg_inverse.man > Unknown option '--show-share' > make[2]: *** [scripts/csg_inverse.man] Error 1 > make[1]: *** [scripts/CMakeFiles/csg_inverse_manpage.dir/all] Error 2 > make: *** [all] Error 2 > > > Somebody has a clue how can i solve this issue??? > > Thanks so much in advance. > > Sacha > > > > > On Jul 15, 1:10 pm, Christoph Junghans <[email protected]> wrote: >> Welcome, >> >> Some versions of cmake are critical, cmake 2.6.4 works as well. >> >> Cheers, >> >> Christoph >> >> 2011/7/15 Javier Ramos <[email protected]>: >> >> > Dear Christoph, >> >> > You are right!!!!. I have updated the cmake version from 2.8.1 to >> > 2.8.4 and now the compilation is fine. >> >> > Thank you very much for your kind help. >> > Cheers, >> >> > Javi >> >> > On 15 jul, 11:14, Christoph Junghans <[email protected]> wrote: >> >> Hi Javier, >> >> >> I remember having a similar problem with an older version of cmake. >> >> Which version of cmake are you using? >> >> ($cmake --version) >> >> >> Cheers, >> >> >> Christoph >> >> >> 2011/7/15 Javier Ramos <[email protected]>: >> >> >> > Dear developers and users, >> >> >> > I am trying to build the votca package following the instructions on >> >> > the web page. However, I have some problems which I am not able to >> >> > solve. >> >> >> > To do that I use the following script >> >> >> > >cat compiler.sh >> >> >> > source /home/nightrain/CODES/VOTCA/VOTCA_1.2/TMP/ >> >> > gromacs-4.5.4_b/bin/GMXRC.bash >> >> > prefix=`pwd` >> >> > echo $prefix >> >> > mkdir -p ${prefix}/src >> >> > cd ${prefix}/src >> >> > wgethttp://votca.googlecode.com/hg/build.sh >> >> > chmod +x build.sh >> >> > ./build.sh --prefix ${prefix} -j 1 --log build.log tools csg >> >> >> > The tools are compiled without problem but in the case of the csg >> >> > package, after sometime, I get the following error: >> >> >> > =================================================== >> >> > (...) >> >> > Scanning dependencies of target csg_property >> >> > [ 55%] Building CXX object src/tools/CMakeFiles/csg_property.dir/ >> >> > csg_property.cc.o >> >> > Linking CXX executable csg_property >> >> > [ 55%] Built target csg_property >> >> > Scanning dependencies of target csg_property_manpage >> >> > [ 55%] Generating csg_property.man >> >> > [ 57%] Built target csg_property_manpage >> >> > Scanning dependencies of target csg_call >> >> > Current revision is 400a0374775a >> >> > [ 57%] Built target csg_call >> >> > Scanning dependencies of target csg_call_manpage >> >> > make[2]: *** No rule to make target `help2t2t',needed by `scripts/ >> >> > help2t2t'. Stop. >> >> > make[1]: *** [scripts/CMakeFiles/csg_call_manpage.dir/all] Error 2 >> >> > make: *** [all] Error 2 >> >> > =================================================== >> >> >> > Please, can someone help me to address this error? >> >> >> > Thanks in advance. Best regards >> >> >> > -------------------------------------------------------------- >> >> > Dr. Javier Ramos >> >> > Molecular Structure and Properties of Polymers >> >> > Department of Macromolecular Physics >> >> > Instituto de Estructura de la Materia (CSIC) >> >> > C/ Serrano 113 bis 28006 Madrid (Spain) >> >> > Voice +34 91 561 68 00 (943112) >> >> > Fax +34 91 585 54 13 >> >> >http://www.biophym.iem.csic.es/biophym >> >> > -------------------------------------------------------------- >> >> >> > P.D. I paste here the content of the build.log file: >> >> >> > >cat build.log >> >> >> > Log of './build.sh --prefix /home/nightrain/CODES/VOTCA/VOTCA_1.2/ >> >> > TMP4 -j 1 tools csg' >> >> > This is VOTCA build.sh, version 1.6.1 >> >> > prefix is '/home/nightrain/CODES/VOTCA/VOTCA_1.2/TMP4' >> >> > Using 1 jobs for make >> >> > Working on tools >> >> > Doing checkout for tools fromhttps://tools.votca.googlecode.com/hg/ >> >> > (CTRL-C to stop) 5 4 3 2 1 >> >> > requesting all changes >> >> > adding changesets >> >> > adding manifests >> >> > adding file changes >> >> > added 474 changesets with 2604 changes to 1678 files (+2 heads) >> >> > updating to branch default >> >> > 1460 files updated, 0 files merged, 0 files removed, 0 files >> >> > unresolved >> >> > Switching to stable branch add --dev option to prevent that >> >> > 7 files updated, 0 files merged, 0 files removed, 0 files unresolved >> >> > cmake -DCMAKE_INSTALL_PREFIX=/home/nightrain/CODES/VOTCA/VOTCA_1.2/ >> >> > TMP4 . >> >> > -- The C compiler identification is GNU >> >> > -- The CXX compiler identification is GNU >> >> > -- Check for working C compiler: /usr/bin/gcc >> >> > -- Check for working C compiler: /usr/bin/gcc -- works >> >> > -- Detecting C compiler ABI info >> >> > -- Detecting C compiler ABI info - done >> >> > -- Check for working CXX compiler: /usr/bin/c++ >> >> > -- Check for working CXX compiler: /usr/bin/c++ -- works >> >> > -- Detecting CXX compiler ABI info >> >> > -- Detecting CXX compiler ABI info - done >> >> > -- Looking for include files CMAKE_HAVE_PTHREAD_H >> >> > -- Looking for include files CMAKE_HAVE_PTHREAD_H - found >> >> > -- Looking for pthread_create in pthreads >> >> > -- Looking for pthread_create in pthreads - not found >> >> > -- Looking for pthread_create in pthread >> >> > -- Looking for pthread_create in pthread - found >> >> > -- Found Threads: TRUE >> >> > -- Found TXT2TAGS: /usr/bin/txt2tags >> >> > -- Looking for assert.h >> >> > -- Looking for assert.h - found >> >> > -- Looking for math.h >> >> > -- Looking for math.h - found >> >> > -- Looking for stdio.h >> >> > -- Looking for stdio.h - found-- Looking for C++ include cmath >> >> > -- Looking for C++ include cmath - found >> >> > -- Looking for C++ include fstream >> >> > -- Looking for C++ include fstream - found >> >> > -- Looking for C++ include functional >> >> > -- Looking for C++ include functional - found >> >> > -- Looking for C++ include iostream >> >> > -- Looking for C++ include iostream - found >> >> > -- Looking for C++ include limits >> >> > -- Looking for C++ include limits - found >> >> > -- Looking for C++ include list >> >> > -- Looking for C++ include list - found >> >> > -- Looking for C++ include map >> >> > -- Looking for C++ include map - found >> >> > -- Looking for C++ include ostream >> >> > -- Looking for C++ include ostream - found >> >> > -- Looking for C++ include sstream >> >> > -- Looking for C++ include sstream - found >> >> > -- Looking for C++ include stack >> >> > -- Looking for C++ include stack - found >> >> > -- Looking for C++ include stdexcept >> >> > -- Looking for C++ include stdexcept - found >> >> > -- Looking for C++ include string >> >> > -- Looking for C++ include string - found >> >> > -- Looking for C++ include vector >> >> > -- Looking for C++ include vector - found >> >> > -- Looking for sqrt in m >> >> > -- Looking for sqrt in m - found >> >> > -- Boost version: 1.40.0 >> >> > -- Found the following Boost libraries: >> >> > -- program_options >> >> > -- Found EXPAT: /usr/lib/libexpat.so >> >> > -- checking for module 'fftw3' >> >> > -- found fftw3, version 3.2.2 >> >> > -- Found FFTW3: /usr/lib/libfftw3.so >> >> > -- Looking for fftw_plan_r2r_1d in /usr/lib/libfftw3.so >> >> > -- Looking for fftw_plan_r2r_1d in /usr/lib/libfftw3.so - found >> >> > -- Found CBLAS: /usr/lib/libcblas.so >> >> > -- Looking for cblas_dsyrk in /usr/lib/libcblas.so >> >> > -- Looking for cblas_dsyrk in /usr/lib/libcblas.so - found >> >> > -- checking for module 'gsl' >> >> > -- found gsl, version 1.13 >> >> > -- Found GSL: /usr/lib/libgsl.so >> >> > -- Looking for gsl_linalg_QR_decomp in /usr/lib/libgsl.so;/usr/lib/ >> >> > libcblas.so >> >> > -- Looking for gsl_linalg_QR_decomp in /usr/lib/libgsl.so;/usr/lib/ >> >> > libcblas.so - found >> >> > -- checking for module 'sqlite3' >> >> > -- found sqlite3, version 3.6.22 >> >> > -- Found SQLITE3: /usr/lib/libsqlite3.so >> >> > -- Found Doxygen: /usr/bin/doxygen >> >> > -- Configuring done >> >> > -- Generating done >> >> > -- Build files have been written to: /home/nightrain/CODES/VOTCA/ >> >> > VOTCA_1.2/TMP4/src/tools >> >> > buidling tools >> >> > Scanning dependencies of target changelog >> >> > [ 0%] Building CHANGELOG using txt2tags >> >> > [ 3%] Built target changelog >> >> > Scanning dependencies of target hgversion >> >> > [ 3%] Built target hgversion >> >> > Scanning dependencies of target manpages >> >> > [ 3%] Building votca_tools manpage >> >> > [ 7%] Built target manpages >> >> > Scanning dependencies of target votca_tools >> >> > [ 11%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ >> >> > linalg.cc.o >> >> > [ 14%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ >> >> > matrix.cc.o >> >> > [ 18%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ >> >> > histogramnew.cc.o >> >> > [ 22%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ >> >> > spline.cc.o >> >> > [ 25%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ >> >> > random.cc.o >> >> > [ 29%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ >> >> > mutex.cc.o >> >> > [ 33%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ >> >> > rangeparser.cc.o >> >> > [ 37%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ >> >> > crosscorrelate.cc.o >> >> > [ 40%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ >> >> > tokenizer.cc.o >> >> > [ 44%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ >> >> > akimaspline.cc.o >> >> > [ 48%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ >> >> > parcer.cc.o >> >> > [ 51%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ >> >> > parsexml.cc.o >> >> > [ 55%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ >> >> > correlate.cc.o >> >> > [ 59%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ >> >> > linspline.cc.o >> >> > [ 62%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ >> >> > table.cc.o >> >> > [ 66%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ >> >> > cubicspline.cc.o >> >> > [ 70%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ >> >> > histogram.cc.o >> >> > [ 74%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ >> >> > thread.cc.o >> >> > [ 77%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ >> >> > datacollection.cc.o >> >> > [ 81%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ >> >> > property.cc.o >> >> > [ 85%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ >> >> > application.cc.o >> >> > [ 88%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ >> >> > version.cc.o >> >> > [ 92%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ >> >> > database.cc.o >> >> > [ 96%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/ >> >> > statement.cc.o >> >> > Linking CXX shared library libvotca_tools.so >> >> > [ 96%] Built target votca_tools >> >> > Scanning dependencies of target linktest >> >> > [100%] >> >> ... >> >> read more » > > -- > You received this message because you are subscribed to the Google Groups > "votca" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]. > For more options, visit this group at > http://groups.google.com/group/votca?hl=en. > > -- Dr. Christoph Junghans Votca Core Developer Web: http://www.votca.org -- You received this message because you are subscribed to the Google Groups "votca" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/votca?hl=en.
