2016-09-14 3:54 GMT-06:00 Rom <[email protected]>: > I just read the same topology and trajectory into csg_map, using the same > Votca, and same input files as before, and it works completely fine! > > I thought the same with the number of frames/grid size etc, since I always > use to get the 'constrained_qrsolve_zero_column_in_matrix' error, but have > never experienced a segfault. If it says 'constrained_qrsolve_zero_column_in_matrix' it isn't in Gromacs.
> > Of course, attached is the terminal output when attempting to force-match. > First line is my csg_fmatch command that I use, and then the rest is the > error on the screen! > > When you say it could be a gromacs error, do you mean there is an error in > my files themselves, or the version of gromacs I am using is imcompatible > with Votca? If csg_map worked your gromacs version is ok. Try the following: 1.) Build VOTCA in Debug mode $ ./build -Wcdu -CMAKE_BUILD_TYPE=Debug tools csg 2.) Check if segfault persists. $ csg_fmatch --top ... 3.) If so, run in gdb $ gdb --args csg_fmatch --top .. 4.) Once it crashed, type "bt" for backtrace and post the trace here. Christoph > > -- > You received this message because you are subscribed to the Google Groups > "votca" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at https://groups.google.com/group/votca. > For more options, visit https://groups.google.com/d/optout. -- Christoph Junghans Web: http://www.compphys.de -- You received this message because you are subscribed to the Google Groups "votca" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/votca. For more options, visit https://groups.google.com/d/optout.
