2017-01-31 15:55 GMT-05:00 Alireza Moradzadeh <[email protected]>: > I am trying to install in a cluster, which I previously worked and on > another Supercomputer. I attach both error file from CMakeFiles. Unfortunately, the files in CMakeFiles have very little useful information. I need the full output of build.sh use: $ ./build.sh --verbose --log build.log tools and send the build.log. Plus, the CMakeCache.txt from tools would be nice, too.
Christoph > > > Best Regards, > Alireza Moradzadeh > > > On Tue, Jan 31, 2017 at 1:04 PM, Christoph Junghans <[email protected]> > wrote: >> >> 2017-01-31 13:49 GMT-05:00 Alireza Moradzadeh <[email protected]>: >> > I am using boost/1.51.0. Basically, I exactly repeat instruction in the >> > handout. >> What version of VOTCA? >> And is this a fresh checkout? >> Can you attach the full output of build.sh? >> >> Christoph >> >> Christoph >> > Thanks, >> > Alireza >> > >> > On Tuesday, January 31, 2017 at 7:58:24 AM UTC-6, Christoph Junghans >> > wrote: >> >> >> >> 2017-01-30 20:33 GMT-05:00 Alireza Moradzadeh <[email protected]>: >> >> > Dear VOTCA Users, >> >> > >> >> > I get an error in installation of votca, any solution is highly >> >> > appreicated. >> >> Which version of boost are you using? Which version of VOTCA are you >> >> trying to build? >> >> And did you build from scratch? (Otherwise try a fresh checkout or the >> >> build.sh options "--clean-out" or "--clean-ignored") >> >> >> >> Christoph >> >> > >> >> > Thanks, >> >> > Alireza >> >> > >> >> > Scanning dependencies of target votca_property >> >> > [ 97%] Building CXX object >> >> > src/tools/CMakeFiles/votca_property.dir/votca_property.cc.o >> >> > Linking CXX executable votca_property >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o: In function >> >> > >> >> > >> >> > `boost::program_options::validation_error::validation_error(boost::program_options::validation_error::kind_t, >> >> > std::string const&, std::string const&, int)': >> >> > >> >> > >> >> > votca_property.cc:(.text._ZN5boost15program_options16validation_errorC2ENS1_6kind_tERKSsS4_i[_ZN5boost15program_options16validation_errorC5ENS1_6kind_tERKSsS4_i]+0x21): >> >> > undefined reference to >> >> > >> >> > >> >> > `boost::program_options::validation_error::get_template(boost::program_options::validation_error::kind_t)' >> >> > >> >> > >> >> > votca_property.cc:(.text._ZN5boost15program_options16validation_errorC2ENS1_6kind_tERKSsS4_i[_ZN5boost15program_options16validation_errorC5ENS1_6kind_tERKSsS4_i]+0x39): >> >> > undefined reference to >> >> > >> >> > >> >> > `boost::program_options::error_with_option_name::error_with_option_name(std::string >> >> > const&, std::string const&, std::string const&, int)' >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o: In function >> >> > >> >> > >> >> > `boost::program_options::error_with_option_name::~error_with_option_name()': >> >> > >> >> > >> >> > votca_property.cc:(.text._ZN5boost15program_options22error_with_option_nameD2Ev[_ZN5boost15program_options22error_with_option_nameD5Ev]+0x12): >> >> > undefined reference to `vtable for >> >> > boost::program_options::error_with_option_name' >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o: In function >> >> > `boost::program_options::validation_error::~validation_error()': >> >> > >> >> > >> >> > votca_property.cc:(.text._ZN5boost15program_options16validation_errorD2Ev[_ZN5boost15program_options16validation_errorD5Ev]+0x12): >> >> > undefined reference to `vtable for >> >> > boost::program_options::error_with_option_name' >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o: In function >> >> > >> >> > `boost::program_options::invalid_option_value::~invalid_option_value()': >> >> > >> >> > >> >> > votca_property.cc:(.text._ZN5boost15program_options20invalid_option_valueD2Ev[_ZN5boost15program_options20invalid_option_valueD5Ev]+0x12): >> >> > undefined reference to `vtable for >> >> > boost::program_options::error_with_option_name' >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o: In function >> >> > >> >> > >> >> > `boost::program_options::error_with_option_name::~error_with_option_name()': >> >> > >> >> > >> >> > votca_property.cc:(.text._ZN5boost15program_options22error_with_option_nameD0Ev[_ZN5boost15program_options22error_with_option_nameD5Ev]+0x12): >> >> > undefined reference to `vtable for >> >> > boost::program_options::error_with_option_name' >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o: In function >> >> > `boost::program_options::validation_error::~validation_error()': >> >> > >> >> > >> >> > votca_property.cc:(.text._ZN5boost15program_options16validation_errorD0Ev[_ZN5boost15program_options16validation_errorD5Ev]+0x12): >> >> > undefined reference to `vtable for >> >> > boost::program_options::error_with_option_name' >> >> > >> >> > >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:votca_property.cc:(.text._ZN5boost15program_options20invalid_option_valueD0Ev[_ZN5boost15program_options20invalid_option_valueD5Ev]+0x12): >> >> > more undefined references to `vtable for >> >> > boost::program_options::error_with_option_name' follow >> >> > >> >> > >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost16exception_detail19error_info_injectorINS_15program_options20invalid_option_valueEEE[_ZTVN5boost16exception_detail19error_info_injectorINS_15program_options20invalid_option_valueEEE]+0x20): >> >> > undefined reference to >> >> > `boost::program_options::error_with_option_name::what() const' >> >> > >> >> > >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost16exception_detail19error_info_injectorINS_15program_options20invalid_option_valueEEE[_ZTVN5boost16exception_detail19error_info_injectorINS_15program_options20invalid_option_valueEEE]+0x30): >> >> > undefined reference to >> >> > >> >> > >> >> > `boost::program_options::error_with_option_name::substitute_placeholders(std::string >> >> > const&) const' >> >> > >> >> > >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options20invalid_option_valueEEEEE[_ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options20invalid_option_valueEEEEE]+0x28): >> >> > undefined reference to >> >> > `boost::program_options::error_with_option_name::what() const' >> >> > >> >> > >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options20invalid_option_valueEEEEE[_ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options20invalid_option_valueEEEEE]+0x38): >> >> > undefined reference to >> >> > >> >> > >> >> > `boost::program_options::error_with_option_name::substitute_placeholders(std::string >> >> > const&) const' >> >> > >> >> > >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost16exception_detail19error_info_injectorINS_15program_options16validation_errorEEE[_ZTVN5boost16exception_detail19error_info_injectorINS_15program_options16validation_errorEEE]+0x20): >> >> > undefined reference to >> >> > `boost::program_options::error_with_option_name::what() const' >> >> > >> >> > >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost16exception_detail19error_info_injectorINS_15program_options16validation_errorEEE[_ZTVN5boost16exception_detail19error_info_injectorINS_15program_options16validation_errorEEE]+0x30): >> >> > undefined reference to >> >> > >> >> > >> >> > `boost::program_options::error_with_option_name::substitute_placeholders(std::string >> >> > const&) const' >> >> > >> >> > >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options16validation_errorEEEEE[_ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options16validation_errorEEEEE]+0x28): >> >> > undefined reference to >> >> > `boost::program_options::error_with_option_name::what() const' >> >> > >> >> > >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options16validation_errorEEEEE[_ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options16validation_errorEEEEE]+0x38): >> >> > undefined reference to >> >> > >> >> > >> >> > `boost::program_options::error_with_option_name::substitute_placeholders(std::string >> >> > const&) const' >> >> > >> >> > >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTIN5boost15program_options16validation_errorE[_ZTIN5boost15program_options16validation_errorE]+0x10): >> >> > undefined reference to `typeinfo for >> >> > boost::program_options::error_with_option_name' >> >> > >> >> > >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost15program_options16validation_errorE[_ZTVN5boost15program_options16validation_errorE]+0x20): >> >> > undefined reference to >> >> > `boost::program_options::error_with_option_name::what() const' >> >> > >> >> > >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost15program_options16validation_errorE[_ZTVN5boost15program_options16validation_errorE]+0x30): >> >> > undefined reference to >> >> > >> >> > >> >> > `boost::program_options::error_with_option_name::substitute_placeholders(std::string >> >> > const&) const' >> >> > >> >> > >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost15program_options20invalid_option_valueE[_ZTVN5boost15program_options20invalid_option_valueE]+0x20): >> >> > undefined reference to >> >> > `boost::program_options::error_with_option_name::what() const' >> >> > >> >> > >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost15program_options20invalid_option_valueE[_ZTVN5boost15program_options20invalid_option_valueE]+0x30): >> >> > undefined reference to >> >> > >> >> > >> >> > `boost::program_options::error_with_option_name::substitute_placeholders(std::string >> >> > const&) const' >> >> > ../libtools/libvotca_tools.so.5: undefined reference to >> >> > >> >> > >> >> > `boost::program_options::options_description::options_description(std::string >> >> > const&, unsigned int, unsigned int)' >> >> > ../libtools/libvotca_tools.so.5: undefined reference to >> >> > `boost::system::system_category()' >> >> > ../libtools/libvotca_tools.so.5: undefined reference to >> >> > >> >> > `boost::program_options::detail::cmdline::get_canonical_option_prefix()' >> >> > ../libtools/libvotca_tools.so.5: undefined reference to >> >> > `boost::system::generic_category()' >> >> > ../libtools/libvotca_tools.so.5: undefined reference to >> >> > `boost::filesystem::path::operator/=(boost::filesystem::path const&)' >> >> > ../libtools/libvotca_tools.so.5: undefined reference to >> >> > >> >> > >> >> > `boost::program_options::options_description::options_description(unsigned >> >> > int, unsigned int)' >> >> > collect2: error: ld returned 1 exit status >> >> > make[2]: *** [src/tools/votca_property] Error 1 >> >> > make[1]: *** [src/tools/CMakeFiles/votca_property.dir/all] Error 2 >> >> > >> >> > -- >> >> > You received this message because you are subscribed to the Google >> >> > Groups >> >> > "votca" group. >> >> > To unsubscribe from this group and stop receiving emails from it, >> >> > send >> >> > an >> >> > email to [email protected]. >> >> > To post to this group, send email to [email protected]. >> >> > Visit this group at https://groups.google.com/group/votca. >> >> > For more options, visit https://groups.google.com/d/optout. >> >> >> >> >> >> >> >> -- >> >> Christoph Junghans >> >> Web: http://www.compphys.de >> > >> > -- >> > You received this message because you are subscribed to the Google >> > Groups >> > "votca" group. >> > To unsubscribe from this group and stop receiving emails from it, send >> > an >> > email to [email protected]. >> > To post to this group, send email to [email protected]. >> > Visit this group at https://groups.google.com/group/votca. >> > For more options, visit https://groups.google.com/d/optout. >> >> >> >> -- >> Christoph Junghans >> Web: http://www.compphys.de >> >> -- >> You received this message because you are subscribed to a topic in the >> Google Groups "votca" group. >> To unsubscribe from this topic, visit >> https://groups.google.com/d/topic/votca/aLyUgGyNQxs/unsubscribe. >> To unsubscribe from this group and all its topics, send an email to >> [email protected]. >> To post to this group, send email to [email protected]. >> Visit this group at https://groups.google.com/group/votca. >> For more options, visit https://groups.google.com/d/optout. > > > -- > You received this message because you are subscribed to the Google Groups > "votca" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at https://groups.google.com/group/votca. > For more options, visit https://groups.google.com/d/optout. -- Christoph Junghans Web: http://www.compphys.de -- You received this message because you are subscribed to the Google Groups "votca" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/votca. For more options, visit https://groups.google.com/d/optout.
