2017-01-31 17:25 GMT-05:00 Sikandar Mashayak <[email protected]>: > Hi, > > In the case of buildtb.log, the errors seem to be caused by Boost 1.41.0 > library, however, if you build with later versions of Boost, e.g., 1.58.0, > build is successful. @ Christoph, is this expected from Boost 1.41.0? What error? $ grep error build-bw.log buildtb.log <nothing>
> > Thanks, > Sikandar > > On Tue, Jan 31, 2017 at 3:48 PM, Alireza Moradzadeh <[email protected]> > wrote: >> >> I attached the files. >> >> >> Best Regards, >> Alireza Moradzadeh >> >> >> On Tue, Jan 31, 2017 at 3:23 PM, Christoph Junghans <[email protected]> >> wrote: >>> >>> 2017-01-31 15:55 GMT-05:00 Alireza Moradzadeh <[email protected]>: >>> > I am trying to install in a cluster, which I previously worked and on >>> > another Supercomputer. I attach both error file from CMakeFiles. >>> Unfortunately, the files in CMakeFiles have very little useful >>> information. >>> I need the full output of build.sh use: >>> $ ./build.sh --verbose --log build.log tools >>> and send the build.log. >>> Plus, the CMakeCache.txt from tools would be nice, too. >>> >>> Christoph >>> > >>> > >>> > Best Regards, >>> > Alireza Moradzadeh >>> > >>> > >>> > On Tue, Jan 31, 2017 at 1:04 PM, Christoph Junghans >>> > <[email protected]> >>> > wrote: >>> >> >>> >> 2017-01-31 13:49 GMT-05:00 Alireza Moradzadeh <[email protected]>: >>> >> > I am using boost/1.51.0. Basically, I exactly repeat instruction in >>> >> > the >>> >> > handout. >>> >> What version of VOTCA? >>> >> And is this a fresh checkout? >>> >> Can you attach the full output of build.sh? >>> >> >>> >> Christoph >>> >> >>> >> Christoph >>> >> > Thanks, >>> >> > Alireza >>> >> > >>> >> > On Tuesday, January 31, 2017 at 7:58:24 AM UTC-6, Christoph Junghans >>> >> > wrote: >>> >> >> >>> >> >> 2017-01-30 20:33 GMT-05:00 Alireza Moradzadeh <[email protected]>: >>> >> >> > Dear VOTCA Users, >>> >> >> > >>> >> >> > I get an error in installation of votca, any solution is highly >>> >> >> > appreicated. >>> >> >> Which version of boost are you using? Which version of VOTCA are >>> >> >> you >>> >> >> trying to build? >>> >> >> And did you build from scratch? (Otherwise try a fresh checkout or >>> >> >> the >>> >> >> build.sh options "--clean-out" or "--clean-ignored") >>> >> >> >>> >> >> Christoph >>> >> >> > >>> >> >> > Thanks, >>> >> >> > Alireza >>> >> >> > >>> >> >> > Scanning dependencies of target votca_property >>> >> >> > [ 97%] Building CXX object >>> >> >> > src/tools/CMakeFiles/votca_property.dir/votca_property.cc.o >>> >> >> > Linking CXX executable votca_property >>> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o: In function >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> > `boost::program_options::validation_error::validation_error(boost::program_options::validation_error::kind_t, >>> >> >> > std::string const&, std::string const&, int)': >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> > votca_property.cc:(.text._ZN5boost15program_options16validation_errorC2ENS1_6kind_tERKSsS4_i[_ZN5boost15program_options16validation_errorC5ENS1_6kind_tERKSsS4_i]+0x21): >>> >> >> > undefined reference to >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> > `boost::program_options::validation_error::get_template(boost::program_options::validation_error::kind_t)' >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> > votca_property.cc:(.text._ZN5boost15program_options16validation_errorC2ENS1_6kind_tERKSsS4_i[_ZN5boost15program_options16validation_errorC5ENS1_6kind_tERKSsS4_i]+0x39): >>> >> >> > undefined reference to >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> > `boost::program_options::error_with_option_name::error_with_option_name(std::string >>> >> >> > const&, std::string const&, std::string const&, int)' >>> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o: In function >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> > `boost::program_options::error_with_option_name::~error_with_option_name()': >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> > votca_property.cc:(.text._ZN5boost15program_options22error_with_option_nameD2Ev[_ZN5boost15program_options22error_with_option_nameD5Ev]+0x12): >>> >> >> > undefined reference to `vtable for >>> >> >> > boost::program_options::error_with_option_name' >>> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o: In function >>> >> >> > `boost::program_options::validation_error::~validation_error()': >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> > votca_property.cc:(.text._ZN5boost15program_options16validation_errorD2Ev[_ZN5boost15program_options16validation_errorD5Ev]+0x12): >>> >> >> > undefined reference to `vtable for >>> >> >> > boost::program_options::error_with_option_name' >>> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o: In function >>> >> >> > >>> >> >> > >>> >> >> > `boost::program_options::invalid_option_value::~invalid_option_value()': >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> > votca_property.cc:(.text._ZN5boost15program_options20invalid_option_valueD2Ev[_ZN5boost15program_options20invalid_option_valueD5Ev]+0x12): >>> >> >> > undefined reference to `vtable for >>> >> >> > boost::program_options::error_with_option_name' >>> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o: In function >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> > `boost::program_options::error_with_option_name::~error_with_option_name()': >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> > votca_property.cc:(.text._ZN5boost15program_options22error_with_option_nameD0Ev[_ZN5boost15program_options22error_with_option_nameD5Ev]+0x12): >>> >> >> > undefined reference to `vtable for >>> >> >> > boost::program_options::error_with_option_name' >>> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o: In function >>> >> >> > `boost::program_options::validation_error::~validation_error()': >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> > votca_property.cc:(.text._ZN5boost15program_options16validation_errorD0Ev[_ZN5boost15program_options16validation_errorD5Ev]+0x12): >>> >> >> > undefined reference to `vtable for >>> >> >> > boost::program_options::error_with_option_name' >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:votca_property.cc:(.text._ZN5boost15program_options20invalid_option_valueD0Ev[_ZN5boost15program_options20invalid_option_valueD5Ev]+0x12): >>> >> >> > more undefined references to `vtable for >>> >> >> > boost::program_options::error_with_option_name' follow >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost16exception_detail19error_info_injectorINS_15program_options20invalid_option_valueEEE[_ZTVN5boost16exception_detail19error_info_injectorINS_15program_options20invalid_option_valueEEE]+0x20): >>> >> >> > undefined reference to >>> >> >> > `boost::program_options::error_with_option_name::what() const' >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost16exception_detail19error_info_injectorINS_15program_options20invalid_option_valueEEE[_ZTVN5boost16exception_detail19error_info_injectorINS_15program_options20invalid_option_valueEEE]+0x30): >>> >> >> > undefined reference to >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> > `boost::program_options::error_with_option_name::substitute_placeholders(std::string >>> >> >> > const&) const' >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options20invalid_option_valueEEEEE[_ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options20invalid_option_valueEEEEE]+0x28): >>> >> >> > undefined reference to >>> >> >> > `boost::program_options::error_with_option_name::what() const' >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options20invalid_option_valueEEEEE[_ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options20invalid_option_valueEEEEE]+0x38): >>> >> >> > undefined reference to >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> > `boost::program_options::error_with_option_name::substitute_placeholders(std::string >>> >> >> > const&) const' >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost16exception_detail19error_info_injectorINS_15program_options16validation_errorEEE[_ZTVN5boost16exception_detail19error_info_injectorINS_15program_options16validation_errorEEE]+0x20): >>> >> >> > undefined reference to >>> >> >> > `boost::program_options::error_with_option_name::what() const' >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost16exception_detail19error_info_injectorINS_15program_options16validation_errorEEE[_ZTVN5boost16exception_detail19error_info_injectorINS_15program_options16validation_errorEEE]+0x30): >>> >> >> > undefined reference to >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> > `boost::program_options::error_with_option_name::substitute_placeholders(std::string >>> >> >> > const&) const' >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options16validation_errorEEEEE[_ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options16validation_errorEEEEE]+0x28): >>> >> >> > undefined reference to >>> >> >> > `boost::program_options::error_with_option_name::what() const' >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options16validation_errorEEEEE[_ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options16validation_errorEEEEE]+0x38): >>> >> >> > undefined reference to >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> > `boost::program_options::error_with_option_name::substitute_placeholders(std::string >>> >> >> > const&) const' >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTIN5boost15program_options16validation_errorE[_ZTIN5boost15program_options16validation_errorE]+0x10): >>> >> >> > undefined reference to `typeinfo for >>> >> >> > boost::program_options::error_with_option_name' >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost15program_options16validation_errorE[_ZTVN5boost15program_options16validation_errorE]+0x20): >>> >> >> > undefined reference to >>> >> >> > `boost::program_options::error_with_option_name::what() const' >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost15program_options16validation_errorE[_ZTVN5boost15program_options16validation_errorE]+0x30): >>> >> >> > undefined reference to >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> > `boost::program_options::error_with_option_name::substitute_placeholders(std::string >>> >> >> > const&) const' >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost15program_options20invalid_option_valueE[_ZTVN5boost15program_options20invalid_option_valueE]+0x20): >>> >> >> > undefined reference to >>> >> >> > `boost::program_options::error_with_option_name::what() const' >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost15program_options20invalid_option_valueE[_ZTVN5boost15program_options20invalid_option_valueE]+0x30): >>> >> >> > undefined reference to >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> > `boost::program_options::error_with_option_name::substitute_placeholders(std::string >>> >> >> > const&) const' >>> >> >> > ../libtools/libvotca_tools.so.5: undefined reference to >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> > `boost::program_options::options_description::options_description(std::string >>> >> >> > const&, unsigned int, unsigned int)' >>> >> >> > ../libtools/libvotca_tools.so.5: undefined reference to >>> >> >> > `boost::system::system_category()' >>> >> >> > ../libtools/libvotca_tools.so.5: undefined reference to >>> >> >> > >>> >> >> > >>> >> >> > `boost::program_options::detail::cmdline::get_canonical_option_prefix()' >>> >> >> > ../libtools/libvotca_tools.so.5: undefined reference to >>> >> >> > `boost::system::generic_category()' >>> >> >> > ../libtools/libvotca_tools.so.5: undefined reference to >>> >> >> > `boost::filesystem::path::operator/=(boost::filesystem::path >>> >> >> > const&)' >>> >> >> > ../libtools/libvotca_tools.so.5: undefined reference to >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> > `boost::program_options::options_description::options_description(unsigned >>> >> >> > int, unsigned int)' >>> >> >> > collect2: error: ld returned 1 exit status >>> >> >> > make[2]: *** [src/tools/votca_property] Error 1 >>> >> >> > make[1]: *** [src/tools/CMakeFiles/votca_property.dir/all] Error >>> >> >> > 2 >>> >> >> > >>> >> >> > -- >>> >> >> > You received this message because you are subscribed to the >>> >> >> > Google >>> >> >> > Groups >>> >> >> > "votca" group. >>> >> >> > To unsubscribe from this group and stop receiving emails from it, >>> >> >> > send >>> >> >> > an >>> >> >> > email to [email protected]. >>> >> >> > To post to this group, send email to [email protected]. >>> >> >> > Visit this group at https://groups.google.com/group/votca. >>> >> >> > For more options, visit https://groups.google.com/d/optout. >>> >> >> >>> >> >> >>> >> >> >>> >> >> -- >>> >> >> Christoph Junghans >>> >> >> Web: http://www.compphys.de >>> >> > >>> >> > -- >>> >> > You received this message because you are subscribed to the Google >>> >> > Groups >>> >> > "votca" group. >>> >> > To unsubscribe from this group and stop receiving emails from it, >>> >> > send >>> >> > an >>> >> > email to [email protected]. >>> >> > To post to this group, send email to [email protected]. >>> >> > Visit this group at https://groups.google.com/group/votca. >>> >> > For more options, visit https://groups.google.com/d/optout. >>> >> >>> >> >>> >> >>> >> -- >>> >> Christoph Junghans >>> >> Web: http://www.compphys.de >>> >> >>> >> -- >>> >> You received this message because you are subscribed to a topic in the >>> >> Google Groups "votca" group. >>> >> To unsubscribe from this topic, visit >>> >> https://groups.google.com/d/topic/votca/aLyUgGyNQxs/unsubscribe. >>> >> To unsubscribe from this group and all its topics, send an email to >>> >> [email protected]. >>> >> To post to this group, send email to [email protected]. >>> >> Visit this group at https://groups.google.com/group/votca. >>> >> For more options, visit https://groups.google.com/d/optout. >>> > >>> > >>> > -- >>> > You received this message because you are subscribed to the Google >>> > Groups >>> > "votca" group. >>> > To unsubscribe from this group and stop receiving emails from it, send >>> > an >>> > email to [email protected]. >>> > To post to this group, send email to [email protected]. >>> > Visit this group at https://groups.google.com/group/votca. >>> > For more options, visit https://groups.google.com/d/optout. >>> >>> >>> >>> -- >>> Christoph Junghans >>> Web: http://www.compphys.de >>> >>> -- >>> You received this message because you are subscribed to a topic in the >>> Google Groups "votca" group. >>> To unsubscribe from this topic, visit >>> https://groups.google.com/d/topic/votca/aLyUgGyNQxs/unsubscribe. >>> To unsubscribe from this group and all its topics, send an email to >>> [email protected]. >>> To post to this group, send email to [email protected]. >>> Visit this group at https://groups.google.com/group/votca. >>> For more options, visit https://groups.google.com/d/optout. >> >> >> -- >> You received this message because you are subscribed to the Google Groups >> "votca" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected]. >> To post to this group, send email to [email protected]. >> Visit this group at https://groups.google.com/group/votca. >> For more options, visit https://groups.google.com/d/optout. > > > -- > You received this message because you are subscribed to the Google Groups > "votca" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at https://groups.google.com/group/votca. > For more options, visit https://groups.google.com/d/optout. -- Christoph Junghans Web: http://www.compphys.de -- You received this message because you are subscribed to the Google Groups "votca" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/votca. For more options, visit https://groups.google.com/d/optout.
