Hi, In the case of buildtb.log, the errors seem to be caused by Boost 1.41.0 library, however, if you build with later versions of Boost, e.g., 1.58.0, build is successful. @ Christoph, is this expected from Boost 1.41.0?
Thanks, Sikandar On Tue, Jan 31, 2017 at 3:48 PM, Alireza Moradzadeh <[email protected]> wrote: > I attached the files. > > > Best Regards, > Alireza Moradzadeh > > > On Tue, Jan 31, 2017 at 3:23 PM, Christoph Junghans <[email protected]> > wrote: > >> 2017-01-31 15:55 GMT-05:00 Alireza Moradzadeh <[email protected]>: >> > I am trying to install in a cluster, which I previously worked and on >> > another Supercomputer. I attach both error file from CMakeFiles. >> Unfortunately, the files in CMakeFiles have very little useful >> information. >> I need the full output of build.sh use: >> $ ./build.sh --verbose --log build.log tools >> and send the build.log. >> Plus, the CMakeCache.txt from tools would be nice, too. >> >> Christoph >> > >> > >> > Best Regards, >> > Alireza Moradzadeh >> > >> > >> > On Tue, Jan 31, 2017 at 1:04 PM, Christoph Junghans <[email protected] >> > >> > wrote: >> >> >> >> 2017-01-31 13:49 GMT-05:00 Alireza Moradzadeh <[email protected]>: >> >> > I am using boost/1.51.0. Basically, I exactly repeat instruction in >> the >> >> > handout. >> >> What version of VOTCA? >> >> And is this a fresh checkout? >> >> Can you attach the full output of build.sh? >> >> >> >> Christoph >> >> >> >> Christoph >> >> > Thanks, >> >> > Alireza >> >> > >> >> > On Tuesday, January 31, 2017 at 7:58:24 AM UTC-6, Christoph Junghans >> >> > wrote: >> >> >> >> >> >> 2017-01-30 20:33 GMT-05:00 Alireza Moradzadeh <[email protected]>: >> >> >> > Dear VOTCA Users, >> >> >> > >> >> >> > I get an error in installation of votca, any solution is highly >> >> >> > appreicated. >> >> >> Which version of boost are you using? Which version of VOTCA are you >> >> >> trying to build? >> >> >> And did you build from scratch? (Otherwise try a fresh checkout or >> the >> >> >> build.sh options "--clean-out" or "--clean-ignored") >> >> >> >> >> >> Christoph >> >> >> > >> >> >> > Thanks, >> >> >> > Alireza >> >> >> > >> >> >> > Scanning dependencies of target votca_property >> >> >> > [ 97%] Building CXX object >> >> >> > src/tools/CMakeFiles/votca_property.dir/votca_property.cc.o >> >> >> > Linking CXX executable votca_property >> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o: In function >> >> >> > >> >> >> > >> >> >> > `boost::program_options::validation_error::validation_error( >> boost::program_options::validation_error::kind_t, >> >> >> > std::string const&, std::string const&, int)': >> >> >> > >> >> >> > >> >> >> > votca_property.cc:(.text._ZN5boost15program_options16validat >> ion_errorC2ENS1_6kind_tERKSsS4_i[_ZN5boost15program_ >> options16validation_errorC5ENS1_6kind_tERKSsS4_i]+0x21): >> >> >> > undefined reference to >> >> >> > >> >> >> > >> >> >> > `boost::program_options::validation_error::get_template( >> boost::program_options::validation_error::kind_t)' >> >> >> > >> >> >> > >> >> >> > votca_property.cc:(.text._ZN5boost15program_options16validat >> ion_errorC2ENS1_6kind_tERKSsS4_i[_ZN5boost15program_ >> options16validation_errorC5ENS1_6kind_tERKSsS4_i]+0x39): >> >> >> > undefined reference to >> >> >> > >> >> >> > >> >> >> > `boost::program_options::error_with_option_name::error_with_ >> option_name(std::string >> >> >> > const&, std::string const&, std::string const&, int)' >> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o: In function >> >> >> > >> >> >> > >> >> >> > `boost::program_options::error_with_option_name::~error_ >> with_option_name()': >> >> >> > >> >> >> > >> >> >> > votca_property.cc:(.text._ZN5boost15program_options22error_ >> with_option_nameD2Ev[_ZN5boost15program_options22err >> or_with_option_nameD5Ev]+0x12): >> >> >> > undefined reference to `vtable for >> >> >> > boost::program_options::error_with_option_name' >> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o: In function >> >> >> > `boost::program_options::validation_error::~validation_error()': >> >> >> > >> >> >> > >> >> >> > votca_property.cc:(.text._ZN5boost15program_options16validat >> ion_errorD2Ev[_ZN5boost15program_options16validation_errorD5Ev]+0x12): >> >> >> > undefined reference to `vtable for >> >> >> > boost::program_options::error_with_option_name' >> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o: In function >> >> >> > >> >> >> > `boost::program_options::invalid_option_value::~invalid_ >> option_value()': >> >> >> > >> >> >> > >> >> >> > votca_property.cc:(.text._ZN5boost15program_options20invalid >> _option_valueD2Ev[_ZN5boost15program_options20inv >> alid_option_valueD5Ev]+0x12): >> >> >> > undefined reference to `vtable for >> >> >> > boost::program_options::error_with_option_name' >> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o: In function >> >> >> > >> >> >> > >> >> >> > `boost::program_options::error_with_option_name::~error_ >> with_option_name()': >> >> >> > >> >> >> > >> >> >> > votca_property.cc:(.text._ZN5boost15program_options22error_ >> with_option_nameD0Ev[_ZN5boost15program_options22err >> or_with_option_nameD5Ev]+0x12): >> >> >> > undefined reference to `vtable for >> >> >> > boost::program_options::error_with_option_name' >> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o: In function >> >> >> > `boost::program_options::validation_error::~validation_error()': >> >> >> > >> >> >> > >> >> >> > votca_property.cc:(.text._ZN5boost15program_options16validat >> ion_errorD0Ev[_ZN5boost15program_options16validation_errorD5Ev]+0x12): >> >> >> > undefined reference to `vtable for >> >> >> > boost::program_options::error_with_option_name' >> >> >> > >> >> >> > >> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:votca_prop >> erty.cc:(.text._ZN5boost15program_options20invalid_option_va >> lueD0Ev[_ZN5boost15program_options20invalid_option_valueD5Ev]+0x12): >> >> >> > more undefined references to `vtable for >> >> >> > boost::program_options::error_with_option_name' follow >> >> >> > >> >> >> > >> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ >> ZTVN5boost16exception_detail19error_info_injectorINS_ >> 15program_options20invalid_option_valueEEE[_ZTVN5boost16e >> xception_detail19error_info_injectorINS_15program_options20i >> nvalid_option_valueEEE]+0x20): >> >> >> > undefined reference to >> >> >> > `boost::program_options::error_with_option_name::what() const' >> >> >> > >> >> >> > >> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ >> ZTVN5boost16exception_detail19error_info_injectorINS_ >> 15program_options20invalid_option_valueEEE[_ZTVN5boost16e >> xception_detail19error_info_injectorINS_15program_options20i >> nvalid_option_valueEEE]+0x30): >> >> >> > undefined reference to >> >> >> > >> >> >> > >> >> >> > `boost::program_options::error_with_option_name::substitute_ >> placeholders(std::string >> >> >> > const&) const' >> >> >> > >> >> >> > >> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ >> ZTVN5boost16exception_detail10clone_implINS0_19error_info_ >> injectorINS_15program_options20invalid_option_ >> valueEEEEE[_ZTVN5boost16exception_detail10clone_implINS0_19e >> rror_info_injectorINS_15program_options20invalid_option_ >> valueEEEEE]+0x28): >> >> >> > undefined reference to >> >> >> > `boost::program_options::error_with_option_name::what() const' >> >> >> > >> >> >> > >> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ >> ZTVN5boost16exception_detail10clone_implINS0_19error_info_ >> injectorINS_15program_options20invalid_option_ >> valueEEEEE[_ZTVN5boost16exception_detail10clone_implINS0_19e >> rror_info_injectorINS_15program_options20invalid_option_ >> valueEEEEE]+0x38): >> >> >> > undefined reference to >> >> >> > >> >> >> > >> >> >> > `boost::program_options::error_with_option_name::substitute_ >> placeholders(std::string >> >> >> > const&) const' >> >> >> > >> >> >> > >> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ >> ZTVN5boost16exception_detail19error_info_injectorINS_ >> 15program_options16validation_errorEEE[_ZTVN5boost16exceptio >> n_detail19error_info_injectorINS_15program_options16validati >> on_errorEEE]+0x20): >> >> >> > undefined reference to >> >> >> > `boost::program_options::error_with_option_name::what() const' >> >> >> > >> >> >> > >> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ >> ZTVN5boost16exception_detail19error_info_injectorINS_ >> 15program_options16validation_errorEEE[_ZTVN5boost16exceptio >> n_detail19error_info_injectorINS_15program_options16validati >> on_errorEEE]+0x30): >> >> >> > undefined reference to >> >> >> > >> >> >> > >> >> >> > `boost::program_options::error_with_option_name::substitute_ >> placeholders(std::string >> >> >> > const&) const' >> >> >> > >> >> >> > >> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ >> ZTVN5boost16exception_detail10clone_implINS0_19error_info_ >> injectorINS_15program_options16validation_errorEEEEE >> [_ZTVN5boost16exception_detail10clone_implINS0_19error_info_ >> injectorINS_15program_options16validation_errorEEEEE]+0x28): >> >> >> > undefined reference to >> >> >> > `boost::program_options::error_with_option_name::what() const' >> >> >> > >> >> >> > >> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ >> ZTVN5boost16exception_detail10clone_implINS0_19error_info_ >> injectorINS_15program_options16validation_errorEEEEE >> [_ZTVN5boost16exception_detail10clone_implINS0_19error_info_ >> injectorINS_15program_options16validation_errorEEEEE]+0x38): >> >> >> > undefined reference to >> >> >> > >> >> >> > >> >> >> > `boost::program_options::error_with_option_name::substitute_ >> placeholders(std::string >> >> >> > const&) const' >> >> >> > >> >> >> > >> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ >> ZTIN5boost15program_options16validation_errorE[_ZTIN5boost15 >> program_options16validation_errorE]+0x10): >> >> >> > undefined reference to `typeinfo for >> >> >> > boost::program_options::error_with_option_name' >> >> >> > >> >> >> > >> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ >> ZTVN5boost15program_options16validation_errorE[_ZTVN5boost15 >> program_options16validation_errorE]+0x20): >> >> >> > undefined reference to >> >> >> > `boost::program_options::error_with_option_name::what() const' >> >> >> > >> >> >> > >> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ >> ZTVN5boost15program_options16validation_errorE[_ZTVN5boost15 >> program_options16validation_errorE]+0x30): >> >> >> > undefined reference to >> >> >> > >> >> >> > >> >> >> > `boost::program_options::error_with_option_name::substitute_ >> placeholders(std::string >> >> >> > const&) const' >> >> >> > >> >> >> > >> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ >> ZTVN5boost15program_options20invalid_option_valueE[_ >> ZTVN5boost15program_options20invalid_option_valueE]+0x20): >> >> >> > undefined reference to >> >> >> > `boost::program_options::error_with_option_name::what() const' >> >> >> > >> >> >> > >> >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ >> ZTVN5boost15program_options20invalid_option_valueE[_ >> ZTVN5boost15program_options20invalid_option_valueE]+0x30): >> >> >> > undefined reference to >> >> >> > >> >> >> > >> >> >> > `boost::program_options::error_with_option_name::substitute_ >> placeholders(std::string >> >> >> > const&) const' >> >> >> > ../libtools/libvotca_tools.so.5: undefined reference to >> >> >> > >> >> >> > >> >> >> > `boost::program_options::options_description::options_descri >> ption(std::string >> >> >> > const&, unsigned int, unsigned int)' >> >> >> > ../libtools/libvotca_tools.so.5: undefined reference to >> >> >> > `boost::system::system_category()' >> >> >> > ../libtools/libvotca_tools.so.5: undefined reference to >> >> >> > >> >> >> > `boost::program_options::detail::cmdline::get_canonical_ >> option_prefix()' >> >> >> > ../libtools/libvotca_tools.so.5: undefined reference to >> >> >> > `boost::system::generic_category()' >> >> >> > ../libtools/libvotca_tools.so.5: undefined reference to >> >> >> > `boost::filesystem::path::operator/=(boost::filesystem::path >> const&)' >> >> >> > ../libtools/libvotca_tools.so.5: undefined reference to >> >> >> > >> >> >> > >> >> >> > `boost::program_options::options_description::options_descri >> ption(unsigned >> >> >> > int, unsigned int)' >> >> >> > collect2: error: ld returned 1 exit status >> >> >> > make[2]: *** [src/tools/votca_property] Error 1 >> >> >> > make[1]: *** [src/tools/CMakeFiles/votca_property.dir/all] Error >> 2 >> >> >> > >> >> >> > -- >> >> >> > You received this message because you are subscribed to the Google >> >> >> > Groups >> >> >> > "votca" group. >> >> >> > To unsubscribe from this group and stop receiving emails from it, >> >> >> > send >> >> >> > an >> >> >> > email to [email protected]. >> >> >> > To post to this group, send email to [email protected]. >> >> >> > Visit this group at https://groups.google.com/group/votca. >> >> >> > For more options, visit https://groups.google.com/d/optout. >> >> >> >> >> >> >> >> >> >> >> >> -- >> >> >> Christoph Junghans >> >> >> Web: http://www.compphys.de >> >> > >> >> > -- >> >> > You received this message because you are subscribed to the Google >> >> > Groups >> >> > "votca" group. >> >> > To unsubscribe from this group and stop receiving emails from it, >> send >> >> > an >> >> > email to [email protected]. >> >> > To post to this group, send email to [email protected]. >> >> > Visit this group at https://groups.google.com/group/votca. >> >> > For more options, visit https://groups.google.com/d/optout. >> >> >> >> >> >> >> >> -- >> >> Christoph Junghans >> >> Web: http://www.compphys.de >> >> >> >> -- >> >> You received this message because you are subscribed to a topic in the >> >> Google Groups "votca" group. >> >> To unsubscribe from this topic, visit >> >> https://groups.google.com/d/topic/votca/aLyUgGyNQxs/unsubscribe. >> >> To unsubscribe from this group and all its topics, send an email to >> >> [email protected]. >> >> To post to this group, send email to [email protected]. >> >> Visit this group at https://groups.google.com/group/votca. >> >> For more options, visit https://groups.google.com/d/optout. >> > >> > >> > -- >> > You received this message because you are subscribed to the Google >> Groups >> > "votca" group. >> > To unsubscribe from this group and stop receiving emails from it, send >> an >> > email to [email protected]. >> > To post to this group, send email to [email protected]. >> > Visit this group at https://groups.google.com/group/votca. >> > For more options, visit https://groups.google.com/d/optout. >> >> >> >> -- >> Christoph Junghans >> Web: http://www.compphys.de >> >> -- >> You received this message because you are subscribed to a topic in the >> Google Groups "votca" group. >> To unsubscribe from this topic, visit https://groups.google.com/d/to >> pic/votca/aLyUgGyNQxs/unsubscribe. >> To unsubscribe from this group and all its topics, send an email to >> [email protected]. >> To post to this group, send email to [email protected]. >> Visit this group at https://groups.google.com/group/votca. >> For more options, visit https://groups.google.com/d/optout. >> > > -- > You received this message because you are subscribed to the Google Groups > "votca" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at https://groups.google.com/group/votca. > For more options, visit https://groups.google.com/d/optout. > -- 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