I attached the files.
Best Regards, Alireza Moradzadeh On Tue, Jan 31, 2017 at 3:23 PM, Christoph Junghans <[email protected]> wrote: > 2017-01-31 15:55 GMT-05:00 Alireza Moradzadeh <[email protected]>: > > I am trying to install in a cluster, which I previously worked and on > > another Supercomputer. I attach both error file from CMakeFiles. > Unfortunately, the files in CMakeFiles have very little useful information. > I need the full output of build.sh use: > $ ./build.sh --verbose --log build.log tools > and send the build.log. > Plus, the CMakeCache.txt from tools would be nice, too. > > Christoph > > > > > > Best Regards, > > Alireza Moradzadeh > > > > > > On Tue, Jan 31, 2017 at 1:04 PM, Christoph Junghans <[email protected]> > > wrote: > >> > >> 2017-01-31 13:49 GMT-05:00 Alireza Moradzadeh <[email protected]>: > >> > I am using boost/1.51.0. Basically, I exactly repeat instruction in > the > >> > handout. > >> What version of VOTCA? > >> And is this a fresh checkout? > >> Can you attach the full output of build.sh? > >> > >> Christoph > >> > >> Christoph > >> > Thanks, > >> > Alireza > >> > > >> > On Tuesday, January 31, 2017 at 7:58:24 AM UTC-6, Christoph Junghans > >> > wrote: > >> >> > >> >> 2017-01-30 20:33 GMT-05:00 Alireza Moradzadeh <[email protected]>: > >> >> > Dear VOTCA Users, > >> >> > > >> >> > I get an error in installation of votca, any solution is highly > >> >> > appreicated. > >> >> Which version of boost are you using? Which version of VOTCA are you > >> >> trying to build? > >> >> And did you build from scratch? (Otherwise try a fresh checkout or > the > >> >> build.sh options "--clean-out" or "--clean-ignored") > >> >> > >> >> Christoph > >> >> > > >> >> > Thanks, > >> >> > Alireza > >> >> > > >> >> > Scanning dependencies of target votca_property > >> >> > [ 97%] Building CXX object > >> >> > src/tools/CMakeFiles/votca_property.dir/votca_property.cc.o > >> >> > Linking CXX executable votca_property > >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o: In function > >> >> > > >> >> > > >> >> > `boost::program_options::validation_error::validation_ > error(boost::program_options::validation_error::kind_t, > >> >> > std::string const&, std::string const&, int)': > >> >> > > >> >> > > >> >> > votca_property.cc:(.text._ZN5boost15program_options16validation_ > errorC2ENS1_6kind_tERKSsS4_i[_ZN5boost15program_options16validation_ > errorC5ENS1_6kind_tERKSsS4_i]+0x21): > >> >> > undefined reference to > >> >> > > >> >> > > >> >> > `boost::program_options::validation_error::get_ > template(boost::program_options::validation_error::kind_t)' > >> >> > > >> >> > > >> >> > votca_property.cc:(.text._ZN5boost15program_options16validation_ > errorC2ENS1_6kind_tERKSsS4_i[_ZN5boost15program_options16validation_ > errorC5ENS1_6kind_tERKSsS4_i]+0x39): > >> >> > undefined reference to > >> >> > > >> >> > > >> >> > `boost::program_options::error_with_option_name::error_ > with_option_name(std::string > >> >> > const&, std::string const&, std::string const&, int)' > >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o: In function > >> >> > > >> >> > > >> >> > `boost::program_options::error_with_option_name::~ > error_with_option_name()': > >> >> > > >> >> > > >> >> > votca_property.cc:(.text._ZN5boost15program_ > options22error_with_option_nameD2Ev[_ZN5boost15program_ > options22error_with_option_nameD5Ev]+0x12): > >> >> > undefined reference to `vtable for > >> >> > boost::program_options::error_with_option_name' > >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o: In function > >> >> > `boost::program_options::validation_error::~validation_error()': > >> >> > > >> >> > > >> >> > votca_property.cc:(.text._ZN5boost15program_ > options16validation_errorD2Ev[_ZN5boost15program_ > options16validation_errorD5Ev]+0x12): > >> >> > undefined reference to `vtable for > >> >> > boost::program_options::error_with_option_name' > >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o: In function > >> >> > > >> >> > `boost::program_options::invalid_option_value::~ > invalid_option_value()': > >> >> > > >> >> > > >> >> > votca_property.cc:(.text._ZN5boost15program_ > options20invalid_option_valueD2Ev[_ZN5boost15program_ > options20invalid_option_valueD5Ev]+0x12): > >> >> > undefined reference to `vtable for > >> >> > boost::program_options::error_with_option_name' > >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o: In function > >> >> > > >> >> > > >> >> > `boost::program_options::error_with_option_name::~ > error_with_option_name()': > >> >> > > >> >> > > >> >> > votca_property.cc:(.text._ZN5boost15program_ > options22error_with_option_nameD0Ev[_ZN5boost15program_ > options22error_with_option_nameD5Ev]+0x12): > >> >> > undefined reference to `vtable for > >> >> > boost::program_options::error_with_option_name' > >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o: In function > >> >> > `boost::program_options::validation_error::~validation_error()': > >> >> > > >> >> > > >> >> > votca_property.cc:(.text._ZN5boost15program_ > options16validation_errorD0Ev[_ZN5boost15program_ > options16validation_errorD5Ev]+0x12): > >> >> > undefined reference to `vtable for > >> >> > boost::program_options::error_with_option_name' > >> >> > > >> >> > > >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:votca_ > property.cc:(.text._ZN5boost15program_options20invalid_option_ > valueD0Ev[_ZN5boost15program_options20invalid_option_valueD5Ev]+0x12): > >> >> > more undefined references to `vtable for > >> >> > boost::program_options::error_with_option_name' follow > >> >> > > >> >> > > >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ > ZTVN5boost16exception_detail19error_info_injectorINS_15program_ > options20invalid_option_valueEEE[_ZTVN5boost16exception_ > detail19error_info_injectorINS_15program_options20invalid_option_ > valueEEE]+0x20): > >> >> > undefined reference to > >> >> > `boost::program_options::error_with_option_name::what() const' > >> >> > > >> >> > > >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ > ZTVN5boost16exception_detail19error_info_injectorINS_15program_ > options20invalid_option_valueEEE[_ZTVN5boost16exception_ > detail19error_info_injectorINS_15program_options20invalid_option_ > valueEEE]+0x30): > >> >> > undefined reference to > >> >> > > >> >> > > >> >> > `boost::program_options::error_with_option_name:: > substitute_placeholders(std::string > >> >> > const&) const' > >> >> > > >> >> > > >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ > ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_ > 15program_options20invalid_option_valueEEEEE[_ZTVN5boost16exception_ > detail10clone_implINS0_19error_info_injectorINS_ > 15program_options20invalid_option_valueEEEEE]+0x28): > >> >> > undefined reference to > >> >> > `boost::program_options::error_with_option_name::what() const' > >> >> > > >> >> > > >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ > ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_ > 15program_options20invalid_option_valueEEEEE[_ZTVN5boost16exception_ > detail10clone_implINS0_19error_info_injectorINS_ > 15program_options20invalid_option_valueEEEEE]+0x38): > >> >> > undefined reference to > >> >> > > >> >> > > >> >> > `boost::program_options::error_with_option_name:: > substitute_placeholders(std::string > >> >> > const&) const' > >> >> > > >> >> > > >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ > ZTVN5boost16exception_detail19error_info_injectorINS_15program_ > options16validation_errorEEE[_ZTVN5boost16exception_detail19error_info_ > injectorINS_15program_options16validation_errorEEE]+0x20): > >> >> > undefined reference to > >> >> > `boost::program_options::error_with_option_name::what() const' > >> >> > > >> >> > > >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ > ZTVN5boost16exception_detail19error_info_injectorINS_15program_ > options16validation_errorEEE[_ZTVN5boost16exception_detail19error_info_ > injectorINS_15program_options16validation_errorEEE]+0x30): > >> >> > undefined reference to > >> >> > > >> >> > > >> >> > `boost::program_options::error_with_option_name:: > substitute_placeholders(std::string > >> >> > const&) const' > >> >> > > >> >> > > >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ > ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_ > 15program_options16validation_errorEEEEE[_ZTVN5boost16exception_ > detail10clone_implINS0_19error_info_injectorINS_ > 15program_options16validation_errorEEEEE]+0x28): > >> >> > undefined reference to > >> >> > `boost::program_options::error_with_option_name::what() const' > >> >> > > >> >> > > >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ > ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_ > 15program_options16validation_errorEEEEE[_ZTVN5boost16exception_ > detail10clone_implINS0_19error_info_injectorINS_ > 15program_options16validation_errorEEEEE]+0x38): > >> >> > undefined reference to > >> >> > > >> >> > > >> >> > `boost::program_options::error_with_option_name:: > substitute_placeholders(std::string > >> >> > const&) const' > >> >> > > >> >> > > >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ > ZTIN5boost15program_options16validation_errorE[_ZTIN5boost15program_ > options16validation_errorE]+0x10): > >> >> > undefined reference to `typeinfo for > >> >> > boost::program_options::error_with_option_name' > >> >> > > >> >> > > >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ > ZTVN5boost15program_options16validation_errorE[_ZTVN5boost15program_ > options16validation_errorE]+0x20): > >> >> > undefined reference to > >> >> > `boost::program_options::error_with_option_name::what() const' > >> >> > > >> >> > > >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ > ZTVN5boost15program_options16validation_errorE[_ZTVN5boost15program_ > options16validation_errorE]+0x30): > >> >> > undefined reference to > >> >> > > >> >> > > >> >> > `boost::program_options::error_with_option_name:: > substitute_placeholders(std::string > >> >> > const&) const' > >> >> > > >> >> > > >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ > ZTVN5boost15program_options20invalid_option_valueE[_ZTVN5boost15program_ > options20invalid_option_valueE]+0x20): > >> >> > undefined reference to > >> >> > `boost::program_options::error_with_option_name::what() const' > >> >> > > >> >> > > >> >> > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ > ZTVN5boost15program_options20invalid_option_valueE[_ZTVN5boost15program_ > options20invalid_option_valueE]+0x30): > >> >> > undefined reference to > >> >> > > >> >> > > >> >> > `boost::program_options::error_with_option_name:: > substitute_placeholders(std::string > >> >> > const&) const' > >> >> > ../libtools/libvotca_tools.so.5: undefined reference to > >> >> > > >> >> > > >> >> > `boost::program_options::options_description::options_ > description(std::string > >> >> > const&, unsigned int, unsigned int)' > >> >> > ../libtools/libvotca_tools.so.5: undefined reference to > >> >> > `boost::system::system_category()' > >> >> > ../libtools/libvotca_tools.so.5: undefined reference to > >> >> > > >> >> > `boost::program_options::detail::cmdline::get_ > canonical_option_prefix()' > >> >> > ../libtools/libvotca_tools.so.5: undefined reference to > >> >> > `boost::system::generic_category()' > >> >> > ../libtools/libvotca_tools.so.5: undefined reference to > >> >> > `boost::filesystem::path::operator/=(boost::filesystem::path > const&)' > >> >> > ../libtools/libvotca_tools.so.5: undefined reference to > >> >> > > >> >> > > >> >> > `boost::program_options::options_description::options_ > description(unsigned > >> >> > int, unsigned int)' > >> >> > collect2: error: ld returned 1 exit status > >> >> > make[2]: *** [src/tools/votca_property] Error 1 > >> >> > make[1]: *** [src/tools/CMakeFiles/votca_property.dir/all] Error 2 > >> >> > > >> >> > -- > >> >> > You received this message because you are subscribed to the Google > >> >> > Groups > >> >> > "votca" group. > >> >> > To unsubscribe from this group and stop receiving emails from it, > >> >> > send > >> >> > an > >> >> > email to [email protected]. > >> >> > To post to this group, send email to [email protected]. > >> >> > Visit this group at https://groups.google.com/group/votca. > >> >> > For more options, visit https://groups.google.com/d/optout. > >> >> > >> >> > >> >> > >> >> -- > >> >> Christoph Junghans > >> >> Web: http://www.compphys.de > >> > > >> > -- > >> > You received this message because you are subscribed to the Google > >> > Groups > >> > "votca" group. > >> > To unsubscribe from this group and stop receiving emails from it, send > >> > an > >> > email to [email protected]. > >> > To post to this group, send email to [email protected]. > >> > Visit this group at https://groups.google.com/group/votca. > >> > For more options, visit https://groups.google.com/d/optout. > >> > >> > >> > >> -- > >> Christoph Junghans > >> Web: http://www.compphys.de > >> > >> -- > >> You received this message because you are subscribed to a topic in the > >> Google Groups "votca" group. > >> To unsubscribe from this topic, visit > >> https://groups.google.com/d/topic/votca/aLyUgGyNQxs/unsubscribe. > >> To unsubscribe from this group and all its topics, send an email to > >> [email protected]. > >> To post to this group, send email to [email protected]. > >> Visit this group at https://groups.google.com/group/votca. > >> For more options, visit https://groups.google.com/d/optout. > > > > > > -- > > You received this message because you are subscribed to the Google Groups > > "votca" group. > > To unsubscribe from this group and stop receiving emails from it, send an > > email to [email protected]. > > To post to this group, send email to [email protected]. > > Visit this group at https://groups.google.com/group/votca. > > For more options, visit https://groups.google.com/d/optout. > > > > -- > Christoph Junghans > Web: http://www.compphys.de > > -- > You received this message because you are subscribed to a topic in the > Google Groups "votca" group. > To unsubscribe from this topic, visit https://groups.google.com/d/ > topic/votca/aLyUgGyNQxs/unsubscribe. > To unsubscribe from this group and all its topics, send an email to > [email protected]. > To post to this group, send email to [email protected]. > Visit this group at https://groups.google.com/group/votca. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "votca" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/votca. For more options, visit https://groups.google.com/d/optout.
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