For automated comparisons with Nucmer and Promer and viewing with ACT you can use Synteny: http://nbc11.biologie.uni-kl.de/synteny/index.pl
Cheers, Michael. ----- Original Message ----- From: "Bossers, Alex" <alex.boss...@wur.nl> To: <artemis-users@sanger.ac.uk> Sent: Thursday, April 23, 2009 10:54 PM Subject: [Artemis-users] ACT and MUMMER > Hello all, > > I am a big fan of artemis and have ported some of my annotation files automatically to it. > > Currently I am interested in doing multiple genome comparisons. I know I can use webact or double act to generate big_blast alignments which should be appropriate for opening in ACT. > However, I have been working with mummer (nucmer in particular) and even though the artemis/act "manual" tells I should be able to open them I can nowhere find which files to use (they all seem to fail). Do I need to run mummer with specific options or do I need a differentparser for that? > > Thanks for any help..... this is already costing me several nights to find out :-( > > Alex > > > > _______________________________________________ > Artemis-users mailing list > Artemis-users@sanger.ac.uk > http://lists.sanger.ac.uk/mailman/listinfo/artemis-users _______________________________________________ Artemis-users mailing list Artemis-users@sanger.ac.uk http://lists.sanger.ac.uk/mailman/listinfo/artemis-users
