Guy, > Thanks -- I had missed noting legacy_blast.pl. After editing the script to > reflect my local install's DEFAULT_PATH for blast it seems to be working at a > direct command line level (i.e., I tested a couple of queries and they > worked). So setting up a symlink sounds like the way to go -- I'm rusty on > those, and am working in Mac OS X, so some reading is in order. Thanks again!
# change to folder the blast+ binaries are in % cd /path/to/blast+/bin # ensure it is executable % chmod a+rx legacy_blast.pl # create a symbolic link % ln -s legacy_blast.pl blastall # check that it is in your PATH % hash -r % which blastall --Torsten Seemann --Victorian Bioinformatics Consortium, Dept. Microbiology, Monash University, AUSTRALIA _______________________________________________ Artemis-users mailing list Artemis-users@sanger.ac.uk http://lists.sanger.ac.uk/mailman/listinfo/artemis-users
